Variant report

Variant	rs10129929
Chromosome Location	chr14:32967964-32967965
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32960517..32962763-chr14:32965947..32968898,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10142582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956992	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145585	0.86[ASN][1000 genomes]
rs2145586	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32963400-32968800	Active TSS	Right Ventricle	heart
2	chr14:32964400-32969200	Weak transcription	Fetal Lung	lung
3	chr14:32964600-32969200	Weak transcription	Hela-S3	cervix
4	chr14:32964800-32969800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:32965000-32970600	Weak transcription	Aorta	Aorta
6	chr14:32965400-32976400	Weak transcription	HSMM	muscle
7	chr14:32966000-32969400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:32966400-32969200	Weak transcription	Brain Substantia Nigra	brain
9	chr14:32966400-32969400	Weak transcription	Brain Anterior Caudate	brain
10	chr14:32966400-32969400	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:32966400-32969400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:32966400-32976800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:32966600-32969200	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:32966600-32969400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:32966600-32971200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:32966600-32976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:32966800-32969200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:32967200-32968000	Weak transcription	Brain Angular Gyrus	brain
19	chr14:32967200-32968000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr14:32967200-32969600	Enhancers	Fetal Heart	heart
21	chr14:32967200-32969600	Weak transcription	Osteobl	bone
22	chr14:32967200-32978400	Weak transcription	Fetal Muscle Leg	muscle
23	chr14:32967400-32969400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:32967600-32968600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr14:32967800-32968000	Flanking Active TSS	Left Ventricle	heart
26	chr14:32967800-32968000	Flanking Active TSS	Right Atrium	heart
27	chr14:32967800-32968000	Transcr. at gene 5' and 3'	HSMMtube	muscle
28	chr14:32967800-32968200	Enhancers	Psoas Muscle	Psoas

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