Variant report

Variant	rs10131792
Chromosome Location	chr14:104429226-104429227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:104422761..104424603-chr14:104427460..104430127,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10129730	0.90[AFR][1000 genomes]
rs10137517	0.84[AFR][1000 genomes]
rs10137676	0.94[AFR][1000 genomes]
rs10137889	0.97[AFR][1000 genomes]
rs10139210	0.94[AFR][1000 genomes]
rs10142229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10142365	0.90[AFR][1000 genomes]
rs10144271	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10149898	0.97[AFR][1000 genomes]
rs1053419	0.89[CHB][hapmap]
rs11850704	0.89[CHB][hapmap]
rs17095276	0.83[EUR][1000 genomes]
rs17095279	1.00[EUR][1000 genomes]
rs17101928	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs17101930	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs17101937	0.83[EUR][1000 genomes]
rs17101941	1.00[EUR][1000 genomes]
rs17101944	1.00[EUR][1000 genomes]
rs17101946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs17101950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs17101951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs17101952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs17101953	1.00[EUR][1000 genomes]
rs17101955	1.00[EUR][1000 genomes]
rs17101959	1.00[EUR][1000 genomes]
rs2295661	1.00[EUR][1000 genomes]
rs28514602	0.90[AFR][1000 genomes]
rs28542749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28545507	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28563863	0.87[AFR][1000 genomes]
rs28715405	0.88[AFR][1000 genomes]
rs28841005	0.82[AFR][1000 genomes]
rs3783312	0.88[CHB][hapmap]
rs45523439	0.91[EUR][1000 genomes]
rs4900606	0.88[AFR][1000 genomes]
rs4906386	0.90[AFR][1000 genomes]
rs4906388	0.97[AFR][1000 genomes]
rs4906393	0.94[AFR][1000 genomes]
rs4906394	0.97[AFR][1000 genomes]
rs4906400	0.88[AFR][1000 genomes]
rs4906403	0.84[AFR][1000 genomes]
rs55746000	0.91[AFR][1000 genomes]
rs55866217	0.91[AFR][1000 genomes]
rs56050561	0.97[AFR][1000 genomes]
rs58128911	0.90[AFR][1000 genomes]
rs59838226	0.97[AFR][1000 genomes]
rs7140812	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs74086761	0.85[AFR][1000 genomes]
rs74086783	0.97[AFR][1000 genomes]
rs8014519	0.82[AMR][1000 genomes]
rs8020110	0.84[AFR][1000 genomes]
rs9324070	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
5	nsv1048353	chr14:104361402-104483286	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv902322	chr14:104365310-104464809	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv902323	chr14:104381687-104464809	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv902324	chr14:104399640-104464809	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1049690	chr14:104411621-104575838	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv542208	chr14:104411621-104575838	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv526680	chr14:104427043-104568472	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10131792	C14orf2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104416000-104431000	Weak transcription	Hela-S3	cervix
2	chr14:104417600-104447800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr14:104423200-104445600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr14:104425600-104436400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr14:104427200-104446000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:104427400-104429400	Weak transcription	Fetal Stomach	stomach
7	chr14:104428800-104429800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr14:104428800-104430000	Weak transcription	Fetal Heart	heart

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