Variant report

Variant	rs10131878
Chromosome Location	chr14:68074169-68074170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68073077..68076511-chr14:68087971..68090364,3	K562	blood:
2	chr14:68073137..68074799-chr14:68160211..68163149,2	MCF-7	breast:
3	chr14:68073926..68076120-chr14:68169505..68171234,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072042	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10131481	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131493	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10131731	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131884	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10131990	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10133414	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134090	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134923	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10135791	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135802	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10136402	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10136482	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137882	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10139933	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10140733	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10141534	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144907	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145465	0.88[AFR][1000 genomes]
rs10146550	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146702	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148991	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10150006	0.92[AFR][1000 genomes]
rs10150340	0.92[AFR][1000 genomes]
rs17104480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104482	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104486	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104488	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104495	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104501	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104512	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28368810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28449642	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28457193	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28547499	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28549243	1.00[AMR][1000 genomes]
rs28575699	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3742876	0.98[ASN][1000 genomes]
rs3759760	1.00[ASN][1000 genomes]
rs3759761	1.00[ASN][1000 genomes]
rs4899215	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68067400-68076600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68071400-68076200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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