Variant report

Variant	rs10132557
Chromosome Location	chr14:77835439-77835440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77834994..77837691-chr14:77840044..77842472,2	K562	blood:
2	chr14:77834994..77837715-chr14:77840972..77843467,2	K562	blood:
3	chr14:77828784..77831328-chr14:77834341..77836225,2	K562	blood:
4	chr14:77832875..77836043-chr14:77836828..77840686,4	MCF-7	breast:
5	chr14:77813905..77816792-chr14:77833913..77836690,2	K562	blood:
6	chr14:77785511..77787624-chr14:77834767..77836832,3	MCF-7	breast:
7	chr14:77832011..77834438-chr14:77835196..77837381,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100577	Chromatin interaction
ENSG00000100583	Chromatin interaction
ENSG00000100580	Chromatin interaction
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10134642	0.90[ASN][1000 genomes]
rs10135535	0.91[ASN][1000 genomes]
rs10143274	0.98[ASN][1000 genomes]
rs10145328	0.82[ASN][1000 genomes]
rs1544707	0.86[ASN][1000 genomes]
rs1811281	0.98[ASN][1000 genomes]
rs4903575	0.85[ASN][1000 genomes]
rs8005835	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10132557	GSTZ1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77806400-77838600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr14:77809600-77842000	Weak transcription	HUVEC	blood vessel
3	chr14:77810000-77838800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:77812800-77842000	Weak transcription	Pancreas	Pancrea
5	chr14:77813000-77835600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:77813800-77842400	Weak transcription	Aorta	Aorta
7	chr14:77816800-77835600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:77817000-77842000	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:77817200-77840000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr14:77817200-77841600	Weak transcription	Brain Germinal Matrix	brain
11	chr14:77817200-77842000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:77817400-77841200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr14:77817800-77837600	Weak transcription	Fetal Intestine Small	intestine
14	chr14:77818000-77842000	Weak transcription	Fetal Stomach	stomach
15	chr14:77822400-77841600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:77824200-77835800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:77826200-77837800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:77827200-77837600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr14:77827800-77835600	Weak transcription	Primary B cells from cord blood	blood
20	chr14:77829600-77838600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:77829600-77842000	Weak transcription	Spleen	Spleen
22	chr14:77829800-77842400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr14:77830400-77838400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr14:77831000-77835600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr14:77831000-77841400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr14:77832000-77842000	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:77832600-77841400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr14:77832800-77835800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:77835000-77836800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr14:77835200-77835600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:77835200-77835600	Enhancers	Brain Anterior Caudate	brain
32	chr14:77835200-77836200	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr14:77835200-77836200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr14:77835200-77836200	Enhancers	Liver	Liver
35	chr14:77835200-77836600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:77835400-77835600	Enhancers	GM12878-XiMat	blood
37	chr14:77835400-77836000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr14:77835400-77836000	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr14:77835400-77836200	Enhancers	Primary T cells from cord blood	blood
40	chr14:77835400-77836200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr14:77835400-77836200	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr14:77835400-77836200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr14:77835400-77836200	Enhancers	HepG2	liver
44	chr14:77835400-77836400	Enhancers	Dnd41	blood
45	chr14:77835400-77840400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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