Variant report

Variant	rs10132732
Chromosome Location	chr14:21566277-21566278
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr14:21566233-21566404	GM12878	blood:	n/a	chr14:21566278-21566293 chr14:21566268-21566278 chr14:21566268-21566281 chr14:21566278-21566288 chr14:21566279-21566292 chr14:21566333-21566347
2	MAZ	chr14:21565760-21566393	HepG2	liver:	n/a	chr14:21565867-21565877
3	ZBTB7A	chr14:21565644-21566386	HepG2	liver:	n/a	chr14:21566236-21566244
4	ZBTB7A	chr14:21566201-21566412	K562	blood:	n/a	chr14:21566380-21566388 chr14:21566236-21566244
5	REST	chr14:21565156-21566323	H1-neurons	neurons:	n/a	chr14:21565286-21565299 chr14:21565914-21565927
6	CEBPD	chr14:21565859-21566462	HepG2	liver:	n/a	n/a
7	MAZ	chr14:21565837-21567596	IMR90	lung:	n/a	chr14:21565867-21565877 chr14:21566942-21566952 chr14:21567574-21567581

No.	Distal block	Cell Line	Cell type
1	chr14:21493465..21495146-chr14:21564517..21566869,2	K562	blood:
2	chr14:21493156..21496539-chr14:21563277..21566869,4	K562	blood:
3	chr14:21538435..21540879-chr14:21565246..21568452,4	K562	blood:
4	chr14:21559218..21562308-chr14:21563084..21566776,3	K562	blood:
5	chr14:21535130..21541812-chr14:21564802..21576767,22	MCF-7	breast:
6	chr14:21529965..21532217-chr14:21564746..21566795,2	MCF-7	breast:
7	chr14:21534879..21542621-chr14:21563384..21568050,9	MCF-7	breast:
8	chr14:21488163..21490230-chr14:21563775..21566660,2	K562	blood:

Variant related genes	Relation type
ZNF219	TF binding region
TMEM253	TF binding region
ENSG00000165795	Chromatin interaction
ENSG00000165804	Chromatin interaction
ENSG00000165801	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv916319	chr14:21507092-21896590	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv826882	chr14:21511021-21604201	Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv530770	chr14:21526410-21852363	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
8	nsv525724	chr14:21540863-21574690	Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	esv3490839	chr14:21565112-21567760	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv3490842	chr14:21565112-21567760	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv3423964	chr14:21565137-21567985	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv3324236	chr14:21565662-21567360	Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21558800-21566600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr14:21559800-21566600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:21561600-21566600	Weak transcription	Gastric	stomach
4	chr14:21561600-21566800	Weak transcription	Spleen	Spleen
5	chr14:21562200-21566800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:21562600-21566800	Weak transcription	Liver	Liver
7	chr14:21564600-21566600	Weak transcription	Osteobl	bone
8	chr14:21564600-21566800	Enhancers	Placenta	Placenta
9	chr14:21564800-21567000	Active TSS	Fetal Brain Female	brain
10	chr14:21565000-21567400	Active TSS	Sigmoid Colon	Sigmoid Colon
11	chr14:21565200-21567400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:21565200-21567400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:21565400-21566800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:21565400-21567000	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr14:21565400-21567200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:21565400-21567200	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr14:21565400-21567400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:21565400-21568000	Active TSS	H1 Cell Line	embryonic stem cell
19	chr14:21565600-21566400	Enhancers	Primary B cells from cord blood	blood
20	chr14:21565600-21566800	Weak transcription	Brain Angular Gyrus	brain
21	chr14:21565600-21566800	Weak transcription	Fetal Lung	lung
22	chr14:21565600-21567200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr14:21565600-21567200	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr14:21565600-21567200	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr14:21565600-21567200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:21565600-21567200	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr14:21565600-21567200	Active TSS	HSMMtube	muscle
28	chr14:21565600-21567400	Active TSS	Right Ventricle	heart
29	chr14:21565600-21567400	Active TSS	Hela-S3	cervix
30	chr14:21565600-21567600	Active TSS	Aorta	Aorta
31	chr14:21565600-21567600	Active TSS	Esophagus	oesophagus
32	chr14:21565600-21567800	Active TSS	H9 Cell Line	embryonic stem cell
33	chr14:21565600-21567800	Active TSS	Right Atrium	heart
34	chr14:21565800-21566600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr14:21565800-21566600	Active TSS	HepG2	liver
36	chr14:21565800-21566600	Weak transcription	K562	blood
37	chr14:21565800-21566600	Weak transcription	NH-A	brain
38	chr14:21565800-21566800	Weak transcription	Stomach Mucosa	stomach
39	chr14:21565800-21566800	Weak transcription	NHDF-Ad	bronchial
40	chr14:21565800-21567000	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr14:21565800-21567000	Active TSS	Adipose Nuclei	Adipose
42	chr14:21565800-21567000	Weak transcription	Fetal Heart	heart
43	chr14:21565800-21567000	Active TSS	Thymus	Thymus
44	chr14:21565800-21567200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:21565800-21567200	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr14:21565800-21567200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr14:21565800-21567200	Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr14:21565800-21567200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:21565800-21567200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr14:21565800-21567200	Active TSS	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links