Variant report

Variant	rs10133078
Chromosome Location	chr14:25284732-25284733
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10136693	0.94[ASN][1000 genomes]
rs10138734	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12433081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1381318	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1381319	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1887935	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2282034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2297059	0.96[ASN][1000 genomes]
rs2877685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3759642	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3759643	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs55951119	0.90[ASN][1000 genomes]
rs6574019	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6574033	0.92[ASN][1000 genomes]
rs749594	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs749595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs766668	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8014742	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8016612	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs8018496	0.82[YRI][hapmap]
rs872978	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs872979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9319	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1035284	chr14:25267840-25285191	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv542003	chr14:25267840-25285191	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv456169	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv564071	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25275200-25285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:25275400-25285000	Weak transcription	Lung	lung
3	chr14:25276200-25285400	Weak transcription	Adipose Nuclei	Adipose
4	chr14:25276200-25286600	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:25276600-25284800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr14:25276800-25284800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:25277800-25286600	Weak transcription	Placenta	Placenta
8	chr14:25278000-25286400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:25278600-25287600	Enhancers	Fetal Intestine Large	intestine
10	chr14:25278800-25284800	Weak transcription	HSMM	muscle
11	chr14:25279400-25284800	Enhancers	Fetal Heart	heart
12	chr14:25279800-25284800	Weak transcription	Fetal Kidney	kidney
13	chr14:25279800-25284800	Weak transcription	Fetal Muscle Leg	muscle
14	chr14:25279800-25284800	Weak transcription	Right Atrium	heart
15	chr14:25279800-25285600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:25279800-25286400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:25279800-25286800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:25279800-25287400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:25280000-25285200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:25280000-25285400	Weak transcription	Brain Angular Gyrus	brain
21	chr14:25280000-25285400	Weak transcription	HSMMtube	muscle
22	chr14:25280000-25285600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:25280000-25285600	Weak transcription	Brain Hippocampus Middle	brain
24	chr14:25280000-25286200	Weak transcription	Brain Substantia Nigra	brain
25	chr14:25280600-25286400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:25280600-25286600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr14:25280800-25285800	Weak transcription	Brain Anterior Caudate	brain
28	chr14:25280800-25289200	Weak transcription	Fetal Stomach	stomach
29	chr14:25281800-25287400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:25282800-25285000	Genic enhancers	HepG2	liver
31	chr14:25282800-25285600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr14:25283000-25284800	Strong transcription	Fetal Lung	lung
33	chr14:25283000-25288600	Enhancers	Left Ventricle	heart
34	chr14:25283200-25284800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr14:25283200-25285600	Enhancers	Right Ventricle	heart
36	chr14:25283400-25285600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:25283600-25285200	Enhancers	Duodenum Mucosa	Duodenum
38	chr14:25283600-25285800	Enhancers	Liver	Liver
39	chr14:25283800-25284800	Weak transcription	Gastric	stomach
40	chr14:25283800-25285600	Genic enhancers	Fetal Intestine Small	intestine
41	chr14:25283800-25287400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr14:25284200-25285600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr14:25284600-25286200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr14:25284600-25288000	Enhancers	Stomach Mucosa	stomach
45	chr14:25284600-25289200	Enhancers	Pancreas	Pancrea

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