Variant report

Variant	rs1013347
Chromosome Location	chr13:49810881-49810882
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs12184794	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12871418	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1359066	0.89[GIH][hapmap]
rs1407827	0.89[GIH][hapmap]
rs1407829	0.89[GIH][hapmap]
rs1535922	0.82[GIH][hapmap];0.84[AMR][1000 genomes]
rs1555672	0.81[CHD][hapmap]
rs1983805	0.88[GIH][hapmap]
rs2075610	0.95[CEU][hapmap];0.87[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2146748	0.82[GIH][hapmap]
rs2147399	0.88[AMR][1000 genomes]
rs2181539	0.82[GIH][hapmap]
rs2407521	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs2994377	0.82[GIH][hapmap]
rs2994378	0.82[GIH][hapmap]
rs2994379	0.82[GIH][hapmap]
rs2994380	0.84[GIH][hapmap]
rs4142065	0.82[GIH][hapmap]
rs4530025	0.82[GIH][hapmap]
rs4942799	0.87[GIH][hapmap]
rs4942800	0.88[GIH][hapmap]
rs6561496	0.82[GIH][hapmap]
rs6561497	0.82[GIH][hapmap]
rs6561506	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6561507	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6561510	0.86[LWK][hapmap];0.90[YRI][hapmap]
rs67235936	0.87[AMR][1000 genomes]
rs7139746	0.81[AMR][1000 genomes]
rs7338304	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7982804	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7983885	0.89[GIH][hapmap]
rs7988168	0.82[GIH][hapmap]
rs7994910	0.89[GIH][hapmap]
rs7995616	0.89[GIH][hapmap]
rs7996151	0.84[AMR][1000 genomes]
rs8002911	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9316428	0.82[GIH][hapmap]
rs9526531	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9526532	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535136	0.82[GIH][hapmap]
rs9535145	0.82[GIH][hapmap]
rs9535146	0.82[GIH][hapmap]
rs9535154	0.82[GIH][hapmap]
rs9535155	0.82[GIH][hapmap]
rs9535166	0.82[GIH][hapmap];0.84[AMR][1000 genomes]
rs9535167	0.82[GIH][hapmap]
rs9535170	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9535172	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9562870	0.89[GIH][hapmap]
rs9568150	0.82[GIH][hapmap]
rs9568169	0.94[ASW][hapmap];0.95[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9568171	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9568172	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568173	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9591246	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9591247	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9591249	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs9596073	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs972297	0.84[GIH][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv832607	chr13:49756458-49920894	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49808000-49821200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr13:49808600-49811000	Enhancers	Liver	Liver
3	chr13:49810600-49815200	Weak transcription	Stomach Smooth Muscle	stomach

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