Variant report

Variant	rs10134133
Chromosome Location	chr14:72871936-72871937
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10144932	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11158954	0.88[CEU][hapmap]
rs12434786	0.80[EUR][1000 genomes]
rs12435911	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs2239216	0.81[CEU][hapmap]
rs6574073	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs6574076	0.89[EUR][1000 genomes]
rs7151688	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs7159300	0.89[EUR][1000 genomes]
rs8015756	0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72861000-72873400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72868800-72872200	Weak transcription	Fetal Brain Male	brain
3	chr14:72870800-72872000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:72871000-72872200	Enhancers	Placenta	Placenta
5	chr14:72871800-72873600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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