Variant report

Variant	rs10134275
Chromosome Location	chr14:25309991-25309992
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25278755..25280361-chr14:25308783..25311776,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs8007588	0.90[ASN][1000 genomes]
rs854321	0.96[ASN][1000 genomes]
rs854322	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25288600-25322800	Weak transcription	Placenta	Placenta
2	chr14:25288800-25317400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:25303600-25311800	Weak transcription	Gastric	stomach
4	chr14:25306600-25310000	Enhancers	Fetal Heart	heart
5	chr14:25306600-25321200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:25306800-25310400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:25307200-25315000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:25307200-25319400	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:25307400-25310000	Enhancers	Fetal Intestine Large	intestine
10	chr14:25308000-25310000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr14:25308200-25310000	Enhancers	Brain Hippocampus Middle	brain
12	chr14:25308200-25310000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr14:25308400-25310000	Enhancers	Stomach Mucosa	stomach
14	chr14:25308400-25315000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:25308800-25316800	Weak transcription	Fetal Lung	lung
16	chr14:25309000-25315000	Weak transcription	Brain Angular Gyrus	brain
17	chr14:25309000-25328000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr14:25309200-25310000	Enhancers	Brain Cingulate Gyrus	brain
19	chr14:25309200-25310000	Enhancers	HSMM	muscle
20	chr14:25309200-25310200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:25309200-25310200	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr14:25309400-25310000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:25309600-25310000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr14:25309600-25315000	Weak transcription	Brain Substantia Nigra	brain
25	chr14:25309600-25316800	Weak transcription	Fetal Brain Male	brain
26	chr14:25309800-25310000	Enhancers	Hela-S3	cervix
27	chr14:25309800-25310400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:25309800-25310400	Enhancers	Liver	Liver
29	chr14:25309800-25311200	Weak transcription	Fetal Intestine Small	intestine
30	chr14:25309800-25311200	Weak transcription	Left Ventricle	heart
31	chr14:25309800-25311200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr14:25309800-25311800	Enhancers	HepG2	liver
33	chr14:25309800-25312600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr14:25309800-25313000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr14:25309800-25313000	Weak transcription	Right Ventricle	heart
36	chr14:25309800-25313200	Weak transcription	Lung	lung
37	chr14:25309800-25315000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr14:25309800-25315000	Weak transcription	Brain Anterior Caudate	brain
39	chr14:25309800-25315000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr14:25309800-25315000	Weak transcription	Right Atrium	heart
41	chr14:25309800-25315000	Weak transcription	HSMMtube	muscle
42	chr14:25309800-25317000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:25309800-25323000	Weak transcription	Pancreas	Pancrea
44	chr14:25309800-25324400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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