Variant report

Variant	rs1013517
Chromosome Location	chr9:118157616-118157617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7048319	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2761245	chr9:118157164-118171298	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118150000-118158000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:118154600-118161800	Weak transcription	Fetal Kidney	kidney
3	chr9:118154800-118159800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:118155800-118158200	Enhancers	Adipose Nuclei	Adipose
5	chr9:118155800-118159000	Enhancers	NHDF-Ad	bronchial
6	chr9:118155800-118159400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:118155800-118159600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:118156200-118159000	Enhancers	NHEK	skin
9	chr9:118156200-118159200	Enhancers	HMEC	breast
10	chr9:118156600-118158000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:118156600-118159200	Enhancers	Osteobl	bone
12	chr9:118156800-118158000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:118156800-118159000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:118157000-118158600	Enhancers	A549	lung
15	chr9:118157000-118159200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:118157400-118157800	Enhancers	Brain Substantia Nigra	brain
17	chr9:118157400-118157800	Weak transcription	NH-A	brain
18	chr9:118157400-118162200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:118157600-118158000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr9:118157600-118158200	Enhancers	Rectal Smooth Muscle	rectum
21	chr9:118157600-118159000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:118157600-118159000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr9:118157600-118159000	Enhancers	Fetal Lung	lung
24	chr9:118157600-118159200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:118157600-118160600	Enhancers	HUES6 Cell Line	embryonic stem cell

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