Variant report

Variant	rs10135310
Chromosome Location	chr14:64574140-64574141
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10146044	0.89[ASN][1000 genomes]
rs10147977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10149314	0.94[ASN][1000 genomes]
rs10149623	0.85[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11158532	0.83[TSI][hapmap]
rs12587140	0.91[AFR][1000 genomes]
rs17225625	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28486031	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57016672	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9323445	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:64519400-64592000	Weak transcription	Fetal Brain Male	brain
3	chr14:64526800-64577000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:64542800-64575400	Weak transcription	Hela-S3	cervix
5	chr14:64543000-64576400	Weak transcription	NHDF-Ad	bronchial
6	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr14:64548400-64590800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:64549800-64579800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:64554400-64576400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr14:64556600-64576400	Weak transcription	NHLF	lung
11	chr14:64557000-64577200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:64557200-64581200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:64558600-64581600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr14:64561600-64582400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:64562800-64580200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:64562800-64596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr14:64563200-64579600	Weak transcription	HSMM	muscle
18	chr14:64563400-64579600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:64565400-64574200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:64565400-64579600	Weak transcription	Spleen	Spleen
21	chr14:64565400-64580000	Weak transcription	Lung	lung
22	chr14:64565600-64581200	Weak transcription	Colonic Mucosa	Colon
23	chr14:64565800-64588600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:64566400-64576200	Weak transcription	HMEC	breast
25	chr14:64566400-64580000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:64567200-64616200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:64567400-64577400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr14:64567600-64577000	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr14:64567600-64577600	Strong transcription	Primary T cells from cord blood	blood
31	chr14:64567800-64584800	Weak transcription	Fetal Heart	heart
32	chr14:64568200-64574400	Strong transcription	Fetal Intestine Large	intestine
33	chr14:64568200-64582800	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr14:64568400-64582200	Strong transcription	Dnd41	blood
35	chr14:64568600-64574600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr14:64568600-64574800	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr14:64568600-64577600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:64568800-64590000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr14:64569000-64579600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:64569000-64580800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:64569000-64587800	Weak transcription	Small Intestine	intestine
42	chr14:64569600-64574600	Strong transcription	GM12878-XiMat	blood
43	chr14:64570600-64574200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr14:64570600-64578000	Weak transcription	Left Ventricle	heart
45	chr14:64570600-64579200	Weak transcription	Brain Germinal Matrix	brain
46	chr14:64570600-64579600	Weak transcription	Pancreas	Pancrea
47	chr14:64570600-64580000	Weak transcription	Aorta	Aorta
48	chr14:64570600-64581000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:64570600-64581600	Weak transcription	Gastric	stomach
50	chr14:64570800-64574600	Weak transcription	NHEK	skin

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