Variant report

Variant	rs10135442
Chromosome Location	chr14:105560091-105560092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:105560045-105560287	A549	lung:	n/a	n/a
2	CTCF	chr14:105560011-105560364	GM19239	blood:	n/a	n/a
3	POLR2A	chr14:105560051-105560376	GM12878	blood:	n/a	n/a
4	NRF1	chr14:105559146-105560604	SK-N-SH	brain:	n/a	chr14:105559638-105559649 chr14:105559640-105559649 chr14:105559598-105559607 chr14:105559638-105559652 chr14:105559635-105559649 chr14:105559574-105559583
5	UBTF	chr14:105560024-105560411	K562	blood:	n/a	n/a
6	RUNX3	chr14:105559892-105560480	GM12878	blood:	n/a	chr14:105560286-105560303
7	CTCF	chr14:105559954-105560429	H1-hESC	embryonic stem cell:	n/a	chr14:105560394-105560407
8	PBX3	chr14:105559730-105560683	A549	lung:	n/a	n/a
9	TCF12	chr14:105559888-105560597	ECC-1	luminal epithelium:	n/a	chr14:105560562-105560572
10	SP1	chr14:105559846-105560696	A549	lung:	n/a	chr14:105560338-105560350 chr14:105560339-105560348 chr14:105560340-105560349 chr14:105560338-105560350 chr14:105560263-105560275 chr14:105560339-105560349 chr14:105560340-105560349 chr14:105560430-105560444 chr14:105560263-105560275
11	POLR2A	chr14:105557226-105561146	A549	lung:	n/a	n/a
12	STAT5A	chr14:105559848-105560292	GM12878	blood:	n/a	chr14:105560060-105560072 chr14:105559953-105559965
13	SIN3AK20	chr14:105559971-105560276	A549	lung:	n/a	n/a
14	SIN3A	chr14:105559941-105560388	H1-hESC	embryonic stem cell:	n/a	chr14:105560320-105560331
15	STAT3	chr14:105559978-105560494	MCF10A-Er-Src	breast:	n/a	chr14:105560330-105560342 chr14:105560060-105560072 chr14:105560315-105560326
16	CTCF	chr14:105560074-105560290	SK-N-SH_RA	brain:	n/a	n/a
17	RAD21	chr14:105560085-105560367	K562	blood:	n/a	n/a
18	POLR2A	chr14:105559482-105560477	MCF10A-Er-Src	breast:	n/a	n/a
19	CTCF	chr14:105560053-105560334	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr14:105559345-105560313	GM12878	blood:	n/a	n/a
21	TCF3	chr14:105559873-105560364	GM12878	blood:	n/a	n/a
22	MAX	chr14:105559856-105560679	ECC-1	luminal epithelium:	n/a	n/a
23	YY1	chr14:105560001-105560380	SK-N-SH_RA	brain:	n/a	chr14:105560261-105560275
24	CTCF	chr14:105560083-105560299	GM13976	blood:	n/a	n/a
25	TCF12	chr14:105552661-105561002	A549	lung:	n/a	chr14:105555506-105555515 chr14:105554733-105554741 chr14:105554099-105554109 chr14:105560562-105560572 chr14:105558705-105558715 chr14:105556711-105556721 chr14:105560974-105560982 chr14:105558506-105558516 chr14:105555994-105556004 chr14:105558328-105558335 chr14:105556609-105556616 chr14:105556879-105556889 chr14:105556900-105556910 chr14:105558295-105558305 chr14:105557507-105557514
26	RCOR1	chr14:105560030-105560460	GM12878	blood:	n/a	n/a
27	PML	chr14:105559840-105560360	GM12878	blood:	n/a	n/a
28	POLR2A	chr14:105560012-105560751	A549	lung:	n/a	n/a
29	CTCF	chr14:105559771-105560736	A549	lung:	n/a	chr14:105560394-105560407 chr14:105560586-105560595
30	CTCF	chr14:105560016-105560383	GM12891	blood:	n/a	n/a
31	SIN3AK20	chr14:105560015-105560271	SK-N-SH	brain:	n/a	n/a
32	SP1	chr14:105559819-105560701	A549	lung:	n/a	chr14:105560338-105560350 chr14:105560339-105560348 chr14:105560340-105560349 chr14:105560338-105560350 chr14:105560263-105560275 chr14:105560339-105560349 chr14:105560340-105560349 chr14:105560430-105560444 chr14:105560263-105560275
33	MAX	chr14:105559967-105560577	SK-N-SH	brain:	n/a	n/a
34	ELF1	chr14:105559992-105560412	GM12878	blood:	n/a	chr14:105560337-105560349
35	CTCF	chr14:105559989-105560369	K562	blood:	n/a	n/a
36	FOXA2	chr14:105559872-105560510	A549	lung:	n/a	n/a
37	POLR2A	chr14:105559943-105560335	GM12878	blood:	n/a	n/a
38	CTCF	chr14:105560079-105560327	Gliobla	brain:	n/a	n/a
39	ZNF143	chr14:105560022-105560490	GM12878	blood:	n/a	chr14:105560328-105560347 chr14:105560148-105560166
40	CTBP2	chr14:105559929-105560309	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr14:105559536-105560378	MCF10A-Er-Src	breast:	n/a	n/a
42	CTCF	chr14:105560089-105560312	HepG2	liver:	n/a	n/a
43	NFIC	chr14:105559909-105560599	ECC-1	luminal epithelium:	n/a	n/a
44	POLR2A	chr14:105557763-105560968	A549	lung:	n/a	n/a
45	POLR2A	chr14:105559905-105560765	SK-N-MC	brain:	n/a	n/a
46	TAF1	chr14:105559861-105560663	A549	lung:	n/a	n/a
47	REST	chr14:105559896-105560639	A549	lung:	n/a	chr14:105559947-105559960
48	EGR1	chr14:105560085-105560411	K562	blood:	n/a	chr14:105560323-105560333 chr14:105560259-105560272 chr14:105560280-105560294 chr14:105560174-105560187 chr14:105560279-105560292 chr14:105560260-105560274
49	POLR2A	chr14:105560002-105560337	K562	blood:	n/a	n/a
50	POLR2A	chr14:105557708-105560589	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105555328..105560254-chr14:105631379..105635555,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf79-2	chr14:105559946-105560157	ENSG00000257556

Variant related genes	Relation type
ENSG00000257556	TF binding region
ENSG00000184916	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11160834	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12881514	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2735802	0.88[EUR][1000 genomes]
rs2816660	0.92[EUR][1000 genomes]
rs2816661	0.92[EUR][1000 genomes]
rs2816664	0.86[EUR][1000 genomes]
rs2816667	0.88[EUR][1000 genomes]
rs4267251	0.92[EUR][1000 genomes]
rs4304960	0.87[EUR][1000 genomes]
rs4474629	0.88[EUR][1000 genomes]
rs4983580	0.93[EUR][1000 genomes]
rs8007144	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv902421	chr14:105410183-105574843	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	nsv1052190	chr14:105423761-105722653	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
8	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
9	nsv1042303	chr14:105435649-105633544	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
10	nsv456458	chr14:105435649-105690092	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
11	nsv566150	chr14:105435649-105690092	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
13	nsv456459	chr14:105459140-105617891	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
14	nsv566152	chr14:105459140-105617891	Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
15	nsv902425	chr14:105463936-105690092	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
16	nsv9175	chr14:105496509-105688941	Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
17	nsv902427	chr14:105508577-105585347	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
18	esv2758369	chr14:105513346-105803170	Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
19	esv2760014	chr14:105513346-105803170	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
20	esv3353199	chr14:105558957-105560855	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105557800-105561000	Flanking Active TSS	Colonic Mucosa	Colon
2	chr14:105557800-105561000	Flanking Active TSS	HMEC	breast
3	chr14:105558600-105560800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr14:105558800-105560400	Active TSS	Fetal Brain Female	brain
5	chr14:105559000-105560400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr14:105559000-105560400	Active TSS	Aorta	Aorta
7	chr14:105559000-105560400	Active TSS	A549	lung
8	chr14:105559000-105560600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr14:105559000-105560600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:105559000-105560800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr14:105559000-105560800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
12	chr14:105559000-105561200	Flanking Active TSS	Dnd41	blood
13	chr14:105559200-105560400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
14	chr14:105559200-105560400	Active TSS	Gastric	stomach
15	chr14:105559200-105560400	Active TSS	Small Intestine	intestine
16	chr14:105559200-105560600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:105559200-105560600	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr14:105559200-105560600	Bivalent/Poised TSS	Thymus	Thymus
19	chr14:105559200-105560800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr14:105559200-105560800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:105559200-105560800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:105559200-105560800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr14:105559200-105560800	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr14:105559400-105560200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
25	chr14:105559400-105560200	Active TSS	Fetal Lung	lung
26	chr14:105559400-105560400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:105559400-105560400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:105559400-105560400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
29	chr14:105559400-105560400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:105559400-105560400	Active TSS	Primary T cells from cord blood	blood
31	chr14:105559400-105560400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr14:105559400-105560400	Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr14:105559400-105560400	Active TSS	Brain Anterior Caudate	brain
34	chr14:105559400-105560400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
35	chr14:105559400-105560400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:105559400-105560400	Active TSS	Colon Smooth Muscle	Colon
37	chr14:105559400-105560400	Active TSS	Duodenum Mucosa	Duodenum
38	chr14:105559400-105560400	Active TSS	Fetal Intestine Large	intestine
39	chr14:105559400-105560400	Active TSS	Fetal Intestine Small	intestine
40	chr14:105559400-105560400	Active TSS	Left Ventricle	heart
41	chr14:105559400-105560400	Active TSS	Lung	lung
42	chr14:105559400-105560400	Active TSS	Ovary	ovary
43	chr14:105559400-105560400	Active TSS	Rectal Smooth Muscle	rectum
44	chr14:105559400-105560400	Active TSS	Right Atrium	heart
45	chr14:105559400-105560400	Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr14:105559400-105560400	Active TSS	GM12878-XiMat	blood
47	chr14:105559400-105560400	Active TSS	Hela-S3	cervix
48	chr14:105559400-105560400	Active TSS	HSMMtube	muscle
49	chr14:105559400-105560400	Active TSS	K562	blood
50	chr14:105559400-105560400	Active TSS	NH-A	brain

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