Variant report

Variant	rs10136629
Chromosome Location	chr14:97270839-97270840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:97270252..97272755-chr14:97275339..97277575,4	K562	blood:
2	chr14:97262147..97265294-chr14:97268571..97271608,4	MCF-7	breast:
3	chr14:97266936..97268792-chr14:97269139..97271889,2	MCF-7	breast:
4	chr14:97270310..97272481-chr14:97294425..97296809,2	K562	blood:
5	chr14:97262824..97265554-chr14:97270271..97273136,2	MCF-7	breast:
6	chr14:97269964..97272713-chr14:97520420..97522820,2	K562	blood:
7	chr14:97265808..97269390-chr14:97269409..97272897,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100749	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1885158	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2181693	0.89[ASW][hapmap]
rs4905556	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes]
rs4905559	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7153135	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv510650	chr14:97238489-97325221	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97264600-97272400	Weak transcription	Spleen	Spleen
2	chr14:97264800-97272400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:97264800-97272400	Weak transcription	Gastric	stomach
4	chr14:97264800-97272400	Weak transcription	Pancreas	Pancrea
5	chr14:97264800-97278400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr14:97264800-97288000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:97264800-97321600	Weak transcription	Psoas Muscle	Psoas
8	chr14:97265000-97271600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:97265000-97282000	Weak transcription	Fetal Thymus	thymus
10	chr14:97265200-97271800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr14:97265200-97282200	Weak transcription	Primary T cells from cord blood	blood
12	chr14:97265200-97293200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:97265400-97271000	Weak transcription	Fetal Heart	heart
14	chr14:97265400-97271400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:97265400-97271800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:97265400-97274200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:97265400-97277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:97265400-97278600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr14:97265400-97282600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr14:97265600-97271800	Weak transcription	Primary B cells from cord blood	blood
21	chr14:97265600-97272800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr14:97265600-97277600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr14:97265600-97282200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr14:97265600-97282400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:97265600-97291800	Weak transcription	A549	lung
26	chr14:97266200-97271200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr14:97266200-97271600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr14:97266200-97271600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:97266200-97271800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:97266200-97272600	Weak transcription	NHEK	skin
31	chr14:97266200-97277600	Weak transcription	NHDF-Ad	bronchial
32	chr14:97266200-97277800	Weak transcription	HSMM	muscle
33	chr14:97266200-97282000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr14:97266200-97303200	Weak transcription	Hela-S3	cervix
35	chr14:97266600-97271600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr14:97266600-97272400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:97266800-97271400	Weak transcription	Fetal Brain Female	brain
38	chr14:97266800-97282200	Weak transcription	Thymus	Thymus
39	chr14:97268000-97275000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:97268400-97271400	Weak transcription	Brain Germinal Matrix	brain
41	chr14:97269800-97271000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr14:97269800-97272200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr14:97270000-97271000	Active TSS	GM12878-XiMat	blood
44	chr14:97270000-97271400	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr14:97270000-97272000	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr14:97270000-97272000	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr14:97270000-97272800	Enhancers	Fetal Lung	lung
48	chr14:97270000-97273000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr14:97270200-97271200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:97270200-97271600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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