Variant report

Variant	rs1013687
Chromosome Location	chr7:26439022-26439023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26438821..26439447-chr7:26540126..26541048,3	MCF-7	breast:
2	chr2:70335612..70336128-chr7:26438488..26439026,2	NB4	blood:
3	chr7:26438613..26440865-chr7:26441029..26444147,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX10-2	chr7:26438866-26439274	ENSG00000214870

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1229653	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1229655	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1229661	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1229665	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1229668	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1229676	0.81[AFR][1000 genomes]
rs1229685	0.81[AFR][1000 genomes]
rs1229687	0.81[AFR][1000 genomes]
rs1229688	0.81[AFR][1000 genomes]
rs1234952	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv3374116	chr7:26436952-26439800	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26437200-26439400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:26437400-26439400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:26437400-26439600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr7:26437600-26439200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr7:26437600-26439200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:26437600-26439200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:26437600-26439200	Flanking Active TSS	Liver	Liver
8	chr7:26437600-26439200	Active TSS	HSMM	muscle
9	chr7:26437600-26439400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:26437600-26439400	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:26437800-26439200	Active TSS	Brain Germinal Matrix	brain
12	chr7:26437800-26439200	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr7:26437800-26439400	Active TSS	Fetal Brain Female	brain
14	chr7:26437800-26439400	Active TSS	Fetal Kidney	kidney
15	chr7:26438000-26439600	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr7:26438400-26439200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
17	chr7:26438400-26439400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr7:26438400-26439400	Flanking Active TSS	HUVEC	blood vessel
19	chr7:26438600-26439200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:26438600-26439200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:26438600-26439200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:26438600-26439200	Flanking Active TSS	Primary B cells from peripheral blood	blood
23	chr7:26438600-26439200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:26438600-26439200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr7:26438600-26439200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:26438600-26439200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:26438600-26439200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:26438600-26439200	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr7:26438600-26439200	Flanking Active TSS	Colonic Mucosa	Colon
30	chr7:26438600-26439200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
31	chr7:26438600-26439200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr7:26438600-26439200	Flanking Active TSS	Fetal Muscle Trunk	muscle
33	chr7:26438600-26439200	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr7:26438600-26439200	Flanking Active TSS	Placenta	Placenta
35	chr7:26438600-26439200	Flanking Active TSS	Pancreas	Pancrea
36	chr7:26438600-26439200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
37	chr7:26438600-26439200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr7:26438600-26439200	Bivalent Enhancer	Stomach Mucosa	stomach
39	chr7:26438600-26439200	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr7:26438600-26439200	Flanking Bivalent TSS/Enh	HepG2	liver
41	chr7:26438600-26439200	Flanking Bivalent TSS/Enh	NHEK	skin
42	chr7:26438600-26439400	Flanking Active TSS	Fetal Stomach	stomach
43	chr7:26438600-26439600	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr7:26438600-26439800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:26438600-26440000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr7:26438600-26440200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:26438600-26440200	Flanking Active TSS	Fetal Brain Male	brain
48	chr7:26438800-26439200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
49	chr7:26438800-26439200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:26438800-26439200	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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