Variant report

Variant	rs10136879
Chromosome Location	chr14:82147437-82147438
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10135301	0.94[AFR][1000 genomes]
rs10135307	0.94[AFR][1000 genomes]
rs10135657	1.00[AFR][1000 genomes]
rs10135757	0.94[AFR][1000 genomes]
rs10138195	0.94[AFR][1000 genomes]
rs10138324	0.86[AFR][1000 genomes]
rs10140688	0.94[AFR][1000 genomes]
rs10141111	0.94[AFR][1000 genomes]
rs10141700	0.82[AFR][1000 genomes]
rs10142799	0.94[AFR][1000 genomes]
rs10146021	0.94[AFR][1000 genomes]
rs10148395	0.94[AFR][1000 genomes]
rs10149201	0.94[AFR][1000 genomes]
rs10149253	0.88[AFR][1000 genomes]
rs10149472	0.94[AFR][1000 genomes]
rs10150305	1.00[AFR][1000 genomes]
rs10151612	0.94[AFR][1000 genomes]
rs12323511	0.94[AFR][1000 genomes]
rs28437440	0.86[AFR][1000 genomes]
rs28620826	0.86[AFR][1000 genomes]
rs28652854	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1037114	chr14:82123315-82241676	Bivalent Enhancer Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv523456	chr14:82136840-82172384	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv521291	chr14:82136840-82174341	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82146000-82148000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:82146200-82149200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr14:82146200-82149600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr14:82146400-82148200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:82146400-82149000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:82146600-82147800	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:82147000-82147800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:82147000-82148000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr14:82147000-82149200	Enhancers	Fetal Stomach	stomach
10	chr14:82147200-82147600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
11	chr14:82147400-82147600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr14:82147400-82148200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
13	chr14:82147400-82148800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:82147400-82149200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:82147400-82149600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr14:82147400-82149800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links