Variant report

Variant	rs10137098
Chromosome Location	chr14:103855841-103855842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:103804940..103815889-chr14:103850459..103863829,28	K562	blood:
2	chr14:103794753..103806137-chr14:103849038..103864103,36	MCF-7	breast:
3	chr14:103799041..103818802-chr14:103836567..103862153,82	K562	blood:
4	chr14:103797262..103804754-chr14:103849003..103864058,49	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259775	Chromatin interaction
ENSG00000272533	Chromatin interaction
ENSG00000100664	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10146340	0.92[AFR][1000 genomes]
rs10149270	1.00[EUR][1000 genomes]
rs10151139	1.00[EUR][1000 genomes]
rs11625988	1.00[EUR][1000 genomes]
rs12887238	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1951393	1.00[EUR][1000 genomes]
rs2065014	1.00[EUR][1000 genomes]
rs2065020	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2180992	1.00[EUR][1000 genomes]
rs2403175	1.00[EUR][1000 genomes]
rs34721082	1.00[EUR][1000 genomes]
rs4900576	1.00[EUR][1000 genomes]
rs4906326	1.00[EUR][1000 genomes]
rs6575987	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6575989	0.83[EUR][1000 genomes]
rs7149291	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7152150	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8003497	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042714	chr14:103085298-103860730	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
3	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
4	nsv9168	chr14:103531729-103913306	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
6	nsv542200	chr14:103838939-103868007	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103853000-103861800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:103853200-103856000	Weak transcription	Gastric	stomach
3	chr14:103853200-103860600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:103853400-103857000	Weak transcription	Stomach Mucosa	stomach
5	chr14:103853600-103860200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:103853600-103860200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:103853600-103860600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:103853600-103861800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:103853600-103864200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:103853800-103864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr14:103853800-103867400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:103854000-103860200	Weak transcription	Colonic Mucosa	Colon
13	chr14:103854200-103859400	Weak transcription	Lung	lung
14	chr14:103854200-103859400	Weak transcription	HSMM	muscle
15	chr14:103854400-103856800	Weak transcription	Right Ventricle	heart
16	chr14:103854600-103856800	Weak transcription	Left Ventricle	heart
17	chr14:103854600-103858400	Weak transcription	Esophagus	oesophagus
18	chr14:103854600-103858600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr14:103854600-103859600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:103854600-103859600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:103854600-103861800	Weak transcription	Aorta	Aorta
22	chr14:103854800-103856800	Weak transcription	Small Intestine	intestine
23	chr14:103854800-103858400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr14:103854800-103860600	Weak transcription	Spleen	Spleen
25	chr14:103854800-103865200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr14:103855000-103856800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:103855000-103857000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr14:103855000-103857400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr14:103855000-103859600	Weak transcription	NH-A	brain
30	chr14:103855000-103860200	Weak transcription	Fetal Muscle Leg	muscle
31	chr14:103855000-103862400	Weak transcription	Placenta	Placenta
32	chr14:103855000-103868000	Weak transcription	Fetal Stomach	stomach
33	chr14:103855000-103874800	Weak transcription	Fetal Brain Male	brain
34	chr14:103855200-103856400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr14:103855200-103856400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr14:103855200-103856600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr14:103855200-103856600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr14:103855200-103856600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:103855200-103856600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr14:103855200-103856600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr14:103855200-103856600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr14:103855200-103856600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr14:103855200-103856600	Weak transcription	Psoas Muscle	Psoas
44	chr14:103855200-103856800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:103855200-103856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:103855200-103856800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr14:103855200-103856800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr14:103855200-103857000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr14:103855200-103857000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr14:103855200-103857000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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