Variant report

Variant	rs10137829
Chromosome Location	chr14:80253844-80253845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:80248501..80250431-chr14:80253190..80255342,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10134488	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10138362	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs10138886	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10140701	0.92[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs10142357	0.86[ASN][1000 genomes]
rs10144927	0.89[EUR][1000 genomes]
rs10145081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10149117	0.85[MEX][hapmap];0.86[TSI][hapmap]
rs11849377	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12050371	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2293813	0.81[AMR][1000 genomes]
rs2293814	0.81[AMR][1000 genomes]
rs2293815	0.81[AMR][1000 genomes]
rs28505721	0.81[AMR][1000 genomes]
rs28641573	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28714674	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28724578	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4488380	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4489938	0.85[MEX][hapmap];0.95[TSI][hapmap]
rs60327461	0.91[ASN][1000 genomes]
rs60558485	0.86[ASN][1000 genomes]
rs61992421	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61992427	0.81[AMR][1000 genomes]
rs61992428	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61992431	0.81[AMR][1000 genomes]
rs6574522	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7143833	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs759233	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap]
rs8010965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8011654	0.85[MEX][hapmap];0.86[TSI][hapmap]
rs8020629	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80248000-80262400	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links