Variant report

Variant	rs10138781
Chromosome Location	chr14:81519862-81519863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10131847	0.96[ASN][1000 genomes]
rs10134487	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10143800	0.93[ASN][1000 genomes]
rs10147243	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10150381	0.96[ASN][1000 genomes]
rs10150860	0.98[ASN][1000 genomes]
rs10873333	0.93[ASN][1000 genomes]
rs11159483	0.93[ASN][1000 genomes]
rs11159484	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11159485	0.91[ASN][1000 genomes]
rs11159486	0.91[ASN][1000 genomes]
rs11159487	0.90[ASN][1000 genomes]
rs11159488	0.91[ASN][1000 genomes]
rs12147797	0.94[ASN][1000 genomes]
rs12184961	0.87[ASN][1000 genomes]
rs12184963	0.89[ASN][1000 genomes]
rs12185035	0.91[ASN][1000 genomes]
rs12323350	0.86[ASN][1000 genomes]
rs12323355	0.89[ASN][1000 genomes]
rs12323422	0.85[ASN][1000 genomes]
rs12323481	0.93[ASN][1000 genomes]
rs12323491	0.93[ASN][1000 genomes]
rs12323621	0.93[ASN][1000 genomes]
rs12323693	0.89[ASN][1000 genomes]
rs12323762	0.82[ASN][1000 genomes]
rs12323785	0.93[ASN][1000 genomes]
rs12323790	0.93[ASN][1000 genomes]
rs12323799	0.93[ASN][1000 genomes]
rs12323890	0.83[ASN][1000 genomes]
rs12323893	0.91[ASN][1000 genomes]
rs13353102	0.91[ASN][1000 genomes]
rs13353103	0.91[ASN][1000 genomes]
rs13353104	0.89[ASN][1000 genomes]
rs13353125	0.89[ASN][1000 genomes]
rs17111396	0.97[ASN][1000 genomes]
rs17111398	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17545722	0.94[ASN][1000 genomes]
rs17628249	0.94[ASN][1000 genomes]
rs2024422	0.96[ASN][1000 genomes]
rs2024424	0.98[ASN][1000 genomes]
rs2192727	0.93[ASN][1000 genomes]
rs2268469	0.92[ASN][1000 genomes]
rs2268470	0.93[ASN][1000 genomes]
rs2268471	0.93[ASN][1000 genomes]
rs2268472	0.93[ASN][1000 genomes]
rs2268474	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2300522	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs2300523	0.94[ASN][1000 genomes]
rs2300524	0.94[ASN][1000 genomes]
rs2300525	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs2300526	0.81[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs28416942	0.93[ASN][1000 genomes]
rs28448639	0.87[ASN][1000 genomes]
rs28478356	0.93[ASN][1000 genomes]
rs28675993	0.99[ASN][1000 genomes]
rs28750397	0.98[ASN][1000 genomes]
rs28855991	0.98[ASN][1000 genomes]
rs4619328	0.98[ASN][1000 genomes]
rs61978723	0.93[ASN][1000 genomes]
rs61978724	0.93[ASN][1000 genomes]
rs61978725	0.93[ASN][1000 genomes]
rs61978742	0.89[ASN][1000 genomes]
rs61978743	0.89[ASN][1000 genomes]
rs7147357	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7158224	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs726625	0.93[ASN][1000 genomes]
rs726626	0.93[ASN][1000 genomes]
rs726627	0.93[ASN][1000 genomes]
rs726628	0.91[ASN][1000 genomes]
rs72689928	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10138781	RP11-114N19.1	cis	Thyroid	GTEx
rs10138781	KIAA1737	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81511400-81529000	Weak transcription	Liver	Liver
2	chr14:81517800-81520600	ZNF genes & repeats	Dnd41	blood

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