Variant report

Variant	rs10139350
Chromosome Location	chr14:35187288-35187289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:35187220-35187370	HBMEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:35176925..35179103-chr14:35186723..35188584,2	K562	blood:
2	chr14:35181026..35183598-chr14:35186830..35188685,2	K562	blood:
3	chr14:35183775..35186688-chr14:35186786..35189752,3	K562	blood:

Variant related genes	Relation type
CFL2	TF binding region
ENSG00000165410	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13313362	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv542030	chr14:35176687-35211119	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35184200-35191800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:35184400-35188000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:35184400-35188600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:35184400-35191000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:35184400-35204000	Weak transcription	Pancreas	Pancrea
6	chr14:35184600-35187400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:35184600-35188000	Weak transcription	NH-A	brain
8	chr14:35184800-35187400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:35184800-35188000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:35184800-35191800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:35184800-35192000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:35185000-35187400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:35185000-35187400	Weak transcription	Osteobl	bone
14	chr14:35185000-35192000	Weak transcription	Liver	Liver
15	chr14:35185200-35192000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:35185200-35192000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr14:35185400-35187400	Weak transcription	Hela-S3	cervix
18	chr14:35185400-35187400	Weak transcription	NHDF-Ad	bronchial
19	chr14:35185400-35187600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:35185400-35187600	Weak transcription	HSMM	muscle
21	chr14:35185600-35187600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:35185600-35188000	Weak transcription	Fetal Heart	heart
23	chr14:35185600-35188000	Weak transcription	A549	lung
24	chr14:35185800-35187400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:35185800-35187400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr14:35187000-35187600	Enhancers	Primary T cells from cord blood	blood
27	chr14:35187000-35187800	Enhancers	NHLF	lung
28	chr14:35187000-35188400	Enhancers	HSMMtube	muscle

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