Variant report

Variant	rs10139501
Chromosome Location	chr14:21304803-21304804
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10148607	1.00[AMR][1000 genomes]
rs57320287	1.00[AMR][1000 genomes]
rs60197111	1.00[AMR][1000 genomes]
rs762041	1.00[AMR][1000 genomes]
rs8005794	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758349	chr14:21216108-21471614	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759972	chr14:21216108-21471614	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	nsv427936	chr14:21216108-21531783	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
7	nsv428293	chr14:21216108-21531783	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21304400-21305000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:21304600-21305000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr14:21304600-21305000	Enhancers	Brain Substantia Nigra	brain
4	chr14:21304600-21305600	Enhancers	Brain Cingulate Gyrus	brain
5	chr14:21304600-21305600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr14:21304800-21305000	Enhancers	Brain Angular Gyrus	brain
7	chr14:21304800-21305000	Enhancers	Brain Anterior Caudate	brain
8	chr14:21304800-21305000	Enhancers	A549	lung
9	chr14:21304800-21305200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:21304800-21305400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr14:21304800-21305400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:21304800-21305400	Enhancers	Stomach Mucosa	stomach
13	chr14:21304800-21305600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr14:21304800-21305600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr14:21304800-21305600	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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