Variant report

Variant	rs10139991
Chromosome Location	chr14:21295799-21295800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10137578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138984	1.00[AMR][1000 genomes]
rs17114633	1.00[AMR][1000 genomes]
rs74036527	1.00[AMR][1000 genomes]
rs74036528	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758349	chr14:21216108-21471614	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759972	chr14:21216108-21471614	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	nsv427936	chr14:21216108-21531783	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
7	nsv428293	chr14:21216108-21531783	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21290600-21295800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:21290600-21295800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:21292000-21295800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:21294000-21296600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr14:21294200-21296000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:21294200-21296600	Active TSS	H1 Cell Line	embryonic stem cell
7	chr14:21294400-21296200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr14:21294400-21296200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr14:21294600-21296600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr14:21294800-21296200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr14:21294800-21296400	Active TSS	H9 Cell Line	embryonic stem cell
12	chr14:21295600-21295800	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr14:21295600-21296000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr14:21295600-21296200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr14:21295600-21296200	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links