Variant report

Variant	rs10140143
Chromosome Location	chr14:63424226-63424227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10129697	0.92[CEU][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.91[EUR][1000 genomes]
rs10140061	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10149376	0.91[CHB][hapmap]
rs1255498	0.83[CHB][hapmap]
rs1270031	0.92[CHB][hapmap];1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs17223958	0.92[CEU][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes]
rs2749406	0.91[CHB][hapmap]
rs4899103	0.83[CHB][hapmap]
rs7149511	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv902016	chr14:63411610-63439033	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10140143	MNAT1	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63422400-63425000	Enhancers	NHLF	lung
2	chr14:63422400-63425600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:63422600-63425200	Enhancers	HSMM	muscle
4	chr14:63422800-63424400	Enhancers	HMEC	breast
5	chr14:63422800-63424600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:63422800-63425200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr14:63422800-63425200	Enhancers	NH-A	brain
8	chr14:63422800-63428600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:63423000-63425000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:63423200-63424600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:63423600-63424400	Enhancers	NHEK	skin
12	chr14:63423800-63424600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:63424000-63424600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:63424000-63424800	Enhancers	HSMMtube	muscle
15	chr14:63424200-63425000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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