Variant report

Variant	rs10140854
Chromosome Location	chr14:37812486-37812487
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37811526..37813219-chr14:38057927..38059734,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10132727	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs10134469	1.00[AMR][1000 genomes]
rs10141073	1.00[AMR][1000 genomes]
rs10143648	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10148340	1.00[AMR][1000 genomes]
rs10148472	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10150564	1.00[AMR][1000 genomes]
rs10151539	1.00[AMR][1000 genomes]
rs10872901	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1474885	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1950516	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1950519	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1950885	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs1950887	1.00[AMR][1000 genomes]
rs1950888	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1955931	1.00[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955941	1.00[LWK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs1955948	1.00[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955952	1.00[AMR][1000 genomes]
rs1955955	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1956520	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs2103891	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2103892	1.00[AMR][1000 genomes]
rs2144584	1.00[AMR][1000 genomes]
rs2224344	1.00[AMR][1000 genomes]
rs2415399	1.00[AMR][1000 genomes]
rs4900835	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4900867	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6571800	1.00[AMR][1000 genomes]
rs6571813	1.00[AMR][1000 genomes]
rs7146351	1.00[AMR][1000 genomes]
rs7153565	1.00[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157931	0.87[YRI][hapmap]
rs7161369	1.00[AMR][1000 genomes]
rs761818	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8004838	1.00[AMR][1000 genomes]
rs8013599	1.00[YRI][hapmap]
rs8016268	1.00[LWK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs8017263	1.00[LWK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs8018605	1.00[AMR][1000 genomes]
rs8019384	1.00[AMR][1000 genomes]
rs8019983	1.00[LWK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs8020687	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8021838	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530038	chr14:37590543-38336191	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv915783	chr14:37607836-38002966	Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036854	chr14:37609535-38013533	Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv542045	chr14:37609535-38013533	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv901638	chr14:37702799-37814824	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1797813	chr14:37738197-37846877	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1820642	chr14:37738197-37846877	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv1822817	chr14:37738197-37846877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv1851834	chr14:37738197-37846877	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv901639	chr14:37743583-38038468	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	nsv901640	chr14:37782273-37963104	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv949227	chr14:37785560-37963104	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv3396592	chr14:37806250-37839751	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
14	esv3341413	chr14:37806250-37842508	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
15	esv3384499	chr14:37809250-37843187	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
16	esv1851939	chr14:37810699-37963104	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37775200-37817000	Weak transcription	Aorta	Aorta
2	chr14:37796200-37821400	Weak transcription	Ovary	ovary
3	chr14:37800600-37812600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:37807000-37825400	Weak transcription	Pancreas	Pancrea
5	chr14:37812400-37813200	Active TSS	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links