Variant report

Variant	rs10140921
Chromosome Location	chr14:78297632-78297633
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78265179..78267744-chr14:78297216..78300164,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000063761	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10131384	0.85[YRI][hapmap];0.87[AFR][1000 genomes]
rs10133809	1.00[AFR][1000 genomes]
rs10141176	1.00[YRI][hapmap]
rs10143234	1.00[YRI][hapmap]
rs10144836	0.87[AFR][1000 genomes]
rs10147353	0.85[YRI][hapmap];1.00[AFR][1000 genomes]
rs10438173	1.00[YRI][hapmap]
rs11623841	0.85[YRI][hapmap]
rs17753195	0.85[YRI][hapmap]
rs74065551	0.93[AFR][1000 genomes]
rs9323656	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv565221	chr14:78295451-78298732	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv565232	chr14:78296011-78298732	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78267200-78304200	Weak transcription	HSMMtube	muscle
2	chr14:78267200-78310800	Weak transcription	Esophagus	oesophagus
3	chr14:78274800-78316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:78283200-78301800	Weak transcription	Small Intestine	intestine
5	chr14:78283600-78311000	Weak transcription	Hela-S3	cervix
6	chr14:78284000-78299400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:78284200-78298000	Weak transcription	HepG2	liver
8	chr14:78284200-78309400	Weak transcription	Brain Germinal Matrix	brain
9	chr14:78284200-78312600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr14:78284800-78300800	Weak transcription	Fetal Brain Male	brain
11	chr14:78284800-78305200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:78285800-78305800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr14:78286200-78299000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr14:78286200-78301800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:78286200-78303000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:78286400-78299200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:78286400-78300400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:78286400-78303000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr14:78286400-78305200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:78287000-78301400	Weak transcription	Right Ventricle	heart
21	chr14:78287000-78309400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr14:78287000-78309600	Weak transcription	Osteobl	bone
23	chr14:78288600-78299400	Weak transcription	GM12878-XiMat	blood
24	chr14:78289200-78301200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:78289200-78303400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:78289400-78298600	Weak transcription	Brain Angular Gyrus	brain
27	chr14:78289400-78298600	Weak transcription	Brain Substantia Nigra	brain
28	chr14:78289400-78300600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:78289400-78301000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:78289400-78301800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:78289400-78305000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr14:78289400-78305200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr14:78289400-78305200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:78289600-78299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr14:78289600-78300200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:78289600-78301200	Weak transcription	Psoas Muscle	Psoas
37	chr14:78289600-78303800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr14:78289600-78304600	Weak transcription	Brain Anterior Caudate	brain
39	chr14:78289600-78305000	Weak transcription	Fetal Thymus	thymus
40	chr14:78289600-78307000	Weak transcription	Colonic Mucosa	Colon
41	chr14:78289600-78311600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr14:78289800-78306000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr14:78289800-78309600	Weak transcription	Fetal Brain Female	brain
44	chr14:78290200-78305600	Weak transcription	Colon Smooth Muscle	Colon
45	chr14:78292400-78299200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr14:78292600-78298600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr14:78292800-78298600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:78292800-78305600	Weak transcription	Thymus	Thymus
49	chr14:78293000-78298000	Weak transcription	Gastric	stomach
50	chr14:78293000-78298600	Weak transcription	Brain Inferior Temporal Lobe	brain

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