Variant report

Variant	rs10140930
Chromosome Location	chr14:24935849-24935850
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10143048	0.94[ASN][1000 genomes]
rs10146671	0.94[ASN][1000 genomes]
rs10220622	0.80[EUR][1000 genomes]
rs11158708	0.80[EUR][1000 genomes]
rs11158709	0.80[EUR][1000 genomes]
rs11158727	0.90[ASN][1000 genomes]
rs11627321	0.90[ASN][1000 genomes]
rs11848697	0.94[ASN][1000 genomes]
rs11851739	0.92[ASN][1000 genomes]
rs12433346	0.80[EUR][1000 genomes]
rs12887337	0.89[ASN][1000 genomes]
rs12888641	0.90[ASN][1000 genomes]
rs12895103	0.94[ASN][1000 genomes]
rs12896259	0.94[ASN][1000 genomes]
rs1473723	0.80[EUR][1000 genomes]
rs1473724	0.80[EUR][1000 genomes]
rs17103765	1.00[CEU][hapmap]
rs17184843	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1951138	0.90[ASN][1000 genomes]
rs1951139	0.90[ASN][1000 genomes]
rs1951140	0.90[ASN][1000 genomes]
rs1956891	0.80[EUR][1000 genomes]
rs1956892	0.80[EUR][1000 genomes]
rs1956895	0.80[EUR][1000 genomes]
rs1956897	0.80[EUR][1000 genomes]
rs2012865	0.80[EUR][1000 genomes]
rs2012874	0.80[EUR][1000 genomes]
rs2180838	0.80[EUR][1000 genomes]
rs2253220	0.90[ASN][1000 genomes]
rs2273627	0.89[ASN][1000 genomes]
rs2332332	0.80[EUR][1000 genomes]
rs2332335	0.94[ASN][1000 genomes]
rs2332336	0.92[ASN][1000 genomes]
rs2332337	0.90[ASN][1000 genomes]
rs2332338	0.92[ASN][1000 genomes]
rs2332339	0.92[ASN][1000 genomes]
rs2332340	0.92[ASN][1000 genomes]
rs2332341	0.92[ASN][1000 genomes]
rs2332342	0.92[ASN][1000 genomes]
rs2332343	0.92[ASN][1000 genomes]
rs2332344	0.92[ASN][1000 genomes]
rs2332345	0.92[ASN][1000 genomes]
rs2332346	0.92[ASN][1000 genomes]
rs2877643	0.94[ASN][1000 genomes]
rs2877644	0.93[ASN][1000 genomes]
rs2877646	0.88[ASN][1000 genomes]
rs34207026	0.92[ASN][1000 genomes]
rs34967490	0.86[ASN][1000 genomes]
rs34980262	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35396435	0.92[ASN][1000 genomes]
rs35497084	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35741729	0.92[ASN][1000 genomes]
rs3759635	0.80[EUR][1000 genomes]
rs4390517	0.80[EUR][1000 genomes]
rs4473103	0.87[ASN][1000 genomes]
rs4553505	0.80[EUR][1000 genomes]
rs4586346	0.80[EUR][1000 genomes]
rs4640100	0.80[EUR][1000 genomes]
rs4981515	0.80[EUR][1000 genomes]
rs4981520	0.80[EUR][1000 genomes]
rs4981528	0.90[ASN][1000 genomes]
rs4982915	0.80[EUR][1000 genomes]
rs4982922	0.80[EUR][1000 genomes]
rs4982924	0.80[EUR][1000 genomes]
rs4982925	0.80[EUR][1000 genomes]
rs4982927	0.83[ASN][1000 genomes]
rs4982930	0.94[ASN][1000 genomes]
rs61999094	0.88[ASN][1000 genomes]
rs61999100	0.90[ASN][1000 genomes]
rs7140707	0.90[ASN][1000 genomes]
rs7142828	0.94[ASN][1000 genomes]
rs7142862	0.94[ASN][1000 genomes]
rs7143047	0.80[EUR][1000 genomes]
rs7143604	0.92[ASN][1000 genomes]
rs7149255	0.80[EUR][1000 genomes]
rs7149997	0.93[ASN][1000 genomes]
rs7152718	0.89[ASN][1000 genomes]
rs7155773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7159031	0.92[ASN][1000 genomes]
rs7159825	0.81[EUR][1000 genomes]
rs7160659	0.92[ASN][1000 genomes]
rs743214	0.90[ASN][1000 genomes]
rs743215	0.90[ASN][1000 genomes]
rs753068	0.90[ASN][1000 genomes]
rs753069	0.90[ASN][1000 genomes]
rs761991	0.89[ASN][1000 genomes]
rs761993	0.90[ASN][1000 genomes]
rs761994	0.90[ASN][1000 genomes]
rs761995	0.90[ASN][1000 genomes]
rs761996	0.90[ASN][1000 genomes]
rs8008057	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8009695	0.80[EUR][1000 genomes]
rs8013354	0.80[EUR][1000 genomes]
rs8016644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8019282	0.92[ASN][1000 genomes]
rs874397	0.90[ASN][1000 genomes]
rs911369	0.80[EUR][1000 genomes]
rs911370	0.80[EUR][1000 genomes]
rs9788543	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1053330	chr14:24908047-24993666	Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	n/a
4	nsv564061	chr14:24911138-24945331	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	n/a
5	esv2761824	chr14:24914008-24993666	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
6	nsv1043355	chr14:24914008-24993666	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
7	nsv1045732	chr14:24914008-25019317	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
8	esv19772	chr14:24914740-24951857	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
9	nsv523200	chr14:24915383-24975032	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
10	nsv521915	chr14:24915383-24992619	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
11	nsv564062	chr14:24915383-24992619	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
12	nsv1039955	chr14:24927313-24993666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
13	nsv1035903	chr14:24929447-24981097	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
14	nsv542001	chr14:24929447-24981097	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
15	nsv1042290	chr14:24930993-24990765	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
16	nsv542002	chr14:24930993-24990765	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
17	esv18532	chr14:24932115-24947813	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10140930	C14orf124	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24912800-24950800	Weak transcription	Gastric	stomach
2	chr14:24922200-24946000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:24922800-24951000	Weak transcription	Pancreas	Pancrea
4	chr14:24923200-24937400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:24926000-24936000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:24927600-24951000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:24928200-24950400	Weak transcription	HepG2	liver
8	chr14:24928400-24936000	Weak transcription	Liver	Liver
9	chr14:24928600-24951000	Weak transcription	Placenta	Placenta
10	chr14:24928800-24951000	Weak transcription	Spleen	Spleen
11	chr14:24930800-24951000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:24932400-24936000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr14:24933000-24951400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:24935400-24948400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links