Variant report

Variant	rs10141540
Chromosome Location	chr14:32350371-32350372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10141586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10162318	0.83[EUR][1000 genomes]
rs10162486	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12888730	0.95[EUR][1000 genomes]
rs28453246	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv901593	chr14:32282564-32350371	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv526200	chr14:32308511-32454372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32346800-32351400	Weak transcription	Pancreas	Pancrea
2	chr14:32346800-32351400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr14:32347000-32351400	Weak transcription	Fetal Lung	lung
4	chr14:32347000-32361400	Weak transcription	Right Atrium	heart
5	chr14:32347800-32351400	Weak transcription	Spleen	Spleen
6	chr14:32348200-32351400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:32349000-32351600	Enhancers	NHDF-Ad	bronchial
8	chr14:32349200-32350400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:32349200-32351400	Weak transcription	Adipose Nuclei	Adipose
10	chr14:32349400-32350800	Enhancers	A549	lung
11	chr14:32349400-32352400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:32349600-32350400	Enhancers	Osteobl	bone
13	chr14:32349600-32351600	Enhancers	HSMM	muscle
14	chr14:32349600-32355200	Enhancers	HMEC	breast
15	chr14:32349800-32350400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:32349800-32350400	Enhancers	NH-A	brain
17	chr14:32349800-32350600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:32349800-32350600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:32349800-32351000	Enhancers	Fetal Heart	heart
20	chr14:32349800-32351400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:32349800-32351600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:32349800-32351600	Enhancers	NHLF	lung
23	chr14:32349800-32351800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:32349800-32355000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:32349800-32355000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:32349800-32355200	Enhancers	NHEK	skin
27	chr14:32349800-32356000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:32350000-32350400	Weak transcription	HSMMtube	muscle
29	chr14:32350000-32351800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:32350200-32350400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr14:32350200-32350400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr14:32350200-32350600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:32350200-32350600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr14:32350200-32350600	Enhancers	Colon Smooth Muscle	Colon
35	chr14:32350200-32350600	Enhancers	Gastric	stomach
36	chr14:32350200-32350600	Enhancers	Left Ventricle	heart
37	chr14:32350200-32350600	Enhancers	Ovary	ovary
38	chr14:32350200-32350600	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr14:32350200-32350800	Enhancers	Fetal Muscle Leg	muscle
40	chr14:32350200-32351000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr14:32350200-32351000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr14:32350200-32351200	Enhancers	Placenta Amnion	Placenta Amnion
43	chr14:32350200-32351600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links