Variant report

Variant	rs10141957
Chromosome Location	chr14:39087269-39087270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10137534	0.83[ASN][1000 genomes]
rs12435438	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1349241	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2415496	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533235	chr14:38558180-39117391	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1041288	chr14:39021522-39096964	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1054814	chr14:39039159-39102223	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1045557	chr14:39044244-39102223	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39081200-39087600	Weak transcription	Psoas Muscle	Psoas
2	chr14:39085800-39087600	Enhancers	Brain Substantia Nigra	brain
3	chr14:39085800-39087800	Enhancers	Brain Cingulate Gyrus	brain
4	chr14:39085800-39088200	Enhancers	Brain Hippocampus Middle	brain
5	chr14:39086000-39087600	Enhancers	Fetal Muscle Leg	muscle
6	chr14:39086000-39088000	Enhancers	Brain Anterior Caudate	brain
7	chr14:39086000-39088000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:39086400-39087800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr14:39086400-39088200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr14:39086600-39087800	Enhancers	Brain Angular Gyrus	brain
11	chr14:39087000-39087400	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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