Variant report

Variant	rs10142099
Chromosome Location	chr14:72710051-72710052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10131012	0.91[YRI][hapmap]
rs10134489	0.91[YRI][hapmap]
rs10134542	0.91[YRI][hapmap]
rs10149098	0.90[YRI][hapmap]
rs10150159	0.86[YRI][hapmap]
rs10150242	0.91[YRI][hapmap]
rs1544487	0.90[YRI][hapmap]
rs2238217	0.86[YRI][hapmap]
rs2238218	0.91[YRI][hapmap]
rs2239261	0.91[YRI][hapmap]
rs2332807	0.90[YRI][hapmap]
rs3784049	0.86[YRI][hapmap]
rs4903004	0.91[YRI][hapmap]
rs7350728	0.90[YRI][hapmap]
rs8007922	0.90[YRI][hapmap]
rs847241	0.91[YRI][hapmap]
rs847345	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2432492	chr14:72710037-72710051	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv1060545	chr14:72710045-72710060	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv84290	chr14:72710046-72710060	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72699800-72719600	Weak transcription	Right Ventricle	heart
2	chr14:72706600-72721200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:72706800-72712600	Weak transcription	Fetal Kidney	kidney
4	chr14:72707000-72710200	Weak transcription	Fetal Stomach	stomach
5	chr14:72709000-72711200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:72709800-72710800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:72710000-72710200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr14:72710000-72710600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:72710000-72710600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr14:72710000-72710600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:72710000-72711000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:72710000-72711200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr14:72710000-72711400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr14:72710000-72711400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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