Variant report

Variant	rs10142113
Chromosome Location	chr14:35767829-35767830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35766917..35773748-chr14:35871554..35875430,9	MCF-7	breast:
2	chr14:35766832..35768825-chr14:35868472..35870277,2	MCF-7	breast:
3	chr14:35767249..35769056-chr14:35785281..35787174,2	MCF-7	breast:
4	chr14:35767335..35771562-chr14:35774308..35778069,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100902	Chromatin interaction
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10135636	0.84[EUR][1000 genomes]
rs10140180	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140819	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10141237	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10144186	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151128	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10467708	1.00[EUR][1000 genomes]
rs17458583	1.00[EUR][1000 genomes]
rs17597267	1.00[EUR][1000 genomes]
rs17597281	1.00[EUR][1000 genomes]
rs2277460	1.00[EUR][1000 genomes]
rs28461608	1.00[EUR][1000 genomes]
rs28522717	1.00[EUR][1000 genomes]
rs28714617	0.81[EUR][1000 genomes]
rs4982257	0.83[EUR][1000 genomes]
rs60707741	0.97[EUR][1000 genomes]
rs7140912	1.00[EUR][1000 genomes]
rs7158019	1.00[EUR][1000 genomes]
rs8012896	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8014594	1.00[EUR][1000 genomes]
rs8017330	1.00[EUR][1000 genomes]
rs8017676	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806058	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv1038396	chr14:35714499-35788189	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1045288	chr14:35735886-35788189	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1043840	chr14:35739319-35791879	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35762600-35774400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:35762600-35778400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:35762800-35768200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr14:35762800-35778600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:35762800-35778800	Weak transcription	Aorta	Aorta
6	chr14:35763200-35777000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:35763200-35778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:35763200-35780000	Weak transcription	Fetal Kidney	kidney
9	chr14:35763200-35789600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:35763600-35775000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:35763600-35776800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr14:35763600-35777000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:35763600-35778800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:35763800-35768200	Weak transcription	NH-A	brain
15	chr14:35763800-35777200	Weak transcription	Placenta	Placenta
16	chr14:35763800-35777600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:35763800-35777800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr14:35763800-35777800	Weak transcription	HSMM	muscle
19	chr14:35763800-35778600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:35763800-35778600	Weak transcription	Colonic Mucosa	Colon
21	chr14:35763800-35778600	Weak transcription	Esophagus	oesophagus
22	chr14:35763800-35778600	Weak transcription	Ovary	ovary
23	chr14:35763800-35779200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:35764000-35768400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:35764000-35769200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr14:35764000-35769800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr14:35764000-35770000	Enhancers	Adipose Nuclei	Adipose
28	chr14:35764000-35771000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr14:35764000-35771600	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr14:35764000-35771600	Enhancers	Primary T cells fromperipheralblood	blood
31	chr14:35764000-35772600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr14:35764000-35778200	Weak transcription	Brain Hippocampus Middle	brain
33	chr14:35764000-35778600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:35764000-35779200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr14:35764200-35768400	Weak transcription	Primary B cells from cord blood	blood
36	chr14:35764200-35768800	Weak transcription	NHDF-Ad	bronchial
37	chr14:35764200-35777000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:35764200-35777200	Weak transcription	Osteobl	bone
39	chr14:35764200-35778200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr14:35764400-35768400	Weak transcription	HUVEC	blood vessel
41	chr14:35764400-35773200	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr14:35764400-35774000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr14:35764400-35777800	Weak transcription	NHLF	lung
44	chr14:35764600-35771000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr14:35764600-35778600	Weak transcription	Brain Anterior Caudate	brain
46	chr14:35764600-35778600	Weak transcription	Brain Germinal Matrix	brain
47	chr14:35764800-35772600	Weak transcription	Right Ventricle	heart
48	chr14:35765200-35768000	Weak transcription	Small Intestine	intestine
49	chr14:35765200-35768800	Weak transcription	HMEC	breast
50	chr14:35765200-35769000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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