Variant report

Variant	rs10142246
Chromosome Location	chr14:65118943-65118944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64969948..64971989-chr14:65116730..65119122,2	MCF-7	breast:
2	chr14:65106953..65109220-chr14:65116846..65120872,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11158550	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158551	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58268586	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58273663	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61067746	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72724448	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1008915	chr14:65117194-65126733	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65113000-65121000	Weak transcription	Fetal Heart	heart
2	chr14:65115800-65120600	Weak transcription	NH-A	brain
3	chr14:65116400-65120600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:65116400-65121000	Weak transcription	Pancreas	Pancrea
5	chr14:65116600-65120400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr14:65116600-65120400	Weak transcription	Osteobl	bone
7	chr14:65116600-65120600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:65116600-65120600	Weak transcription	Adipose Nuclei	Adipose
9	chr14:65116600-65120600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:65116600-65120600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:65116800-65120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:65116800-65120400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:65116800-65120600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:65116800-65120600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:65116800-65121200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:65116800-65121200	Weak transcription	Spleen	Spleen
17	chr14:65116800-65125000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:65117000-65120400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:65117000-65120600	Weak transcription	Liver	Liver
20	chr14:65117000-65120600	Weak transcription	Placenta	Placenta
21	chr14:65117000-65128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr14:65117800-65120600	Weak transcription	A549	lung
23	chr14:65117800-65121000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:65118600-65120200	Weak transcription	Fetal Muscle Leg	muscle

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