Variant report

Variant	rs10142304
Chromosome Location	chr14:69482222-69482223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10132132	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10135413	0.83[ASN][1000 genomes]
rs10142305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006016	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8023190	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69473000-69482600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
3	chr14:69481000-69486000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:69481200-69484800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:69481400-69484200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr14:69481800-69482400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr14:69481800-69483200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:69481800-69484800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:69481800-69484800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:69481800-69484800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:69481800-69485000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:69482000-69483400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:69482000-69483400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:69482000-69484200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:69482000-69484600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr14:69482000-69484800	Weak transcription	HepG2	liver
17	chr14:69482000-69485200	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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