Variant report

Variant	rs1014235
Chromosome Location	chr17:67145290-67145291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11868981	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17776227	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34343155	1.00[ASN][1000 genomes]
rs56242200	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62080889	1.00[ASN][1000 genomes]
rs62082731	1.00[ASN][1000 genomes]
rs62082733	1.00[ASN][1000 genomes]
rs72850819	1.00[ASN][1000 genomes]
rs72853630	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv470598	chr17:67081830-67212595	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv575930	chr17:67120025-67212031	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67114600-67162800	Weak transcription	Brain Angular Gyrus	brain
2	chr17:67124800-67150000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr17:67127000-67150600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr17:67130600-67146200	Weak transcription	Lung	lung
5	chr17:67132000-67151600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr17:67133800-67145600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr17:67138000-67154000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr17:67138200-67150600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr17:67138200-67151200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr17:67138200-67151600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr17:67138200-67152200	Weak transcription	Fetal Muscle Leg	muscle
12	chr17:67138600-67147800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr17:67138600-67155400	Weak transcription	Brain Anterior Caudate	brain
14	chr17:67138800-67152000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr17:67138800-67162800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr17:67138800-67182000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr17:67140200-67154000	Weak transcription	Fetal Lung	lung
18	chr17:67141600-67155400	Weak transcription	Colon Smooth Muscle	Colon
19	chr17:67141800-67171800	Weak transcription	GM12878-XiMat	blood
20	chr17:67142000-67148800	Weak transcription	NHDF-Ad	bronchial
21	chr17:67142200-67152400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr17:67142400-67151000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr17:67143400-67146000	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr17:67143600-67146000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr17:67143800-67154200	Weak transcription	Right Ventricle	heart
26	chr17:67144000-67145400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr17:67144000-67148600	Weak transcription	Spleen	Spleen
28	chr17:67144000-67151600	Weak transcription	Fetal Intestine Large	intestine
29	chr17:67144000-67163200	Weak transcription	Left Ventricle	heart
30	chr17:67144000-67175800	Weak transcription	Gastric	stomach
31	chr17:67144000-67236000	Weak transcription	Psoas Muscle	Psoas
32	chr17:67144200-67146000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr17:67144800-67146000	Strong transcription	Pancreas	Pancrea
34	chr17:67144800-67150400	Strong transcription	Liver	Liver
35	chr17:67145000-67145800	Strong transcription	Adipose Nuclei	Adipose
36	chr17:67145000-67146000	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr17:67145000-67146600	Strong transcription	Ovary	ovary
38	chr17:67145000-67150200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links