Variant report

Variant	rs1014312
Chromosome Location	chr3:135621417-135621418
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12633805	1.00[JPT][hapmap]
rs13065499	0.95[JPT][hapmap]
rs13069408	0.90[JPT][hapmap]
rs13072433	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs13072690	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs13072782	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13078865	1.00[JPT][hapmap]
rs13084404	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13092707	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs13095193	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13097172	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1523593	0.90[JPT][hapmap]
rs1523598	0.84[ASN][1000 genomes]
rs1523599	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1523600	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs16843611	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs2140450	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2177407	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs3946444	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4075999	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4678432	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4678434	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4678435	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6439605	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6439610	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6439622	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs6439623	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs6439624	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs6779903	0.90[JPT][hapmap]
rs6803679	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6803786	0.90[JPT][hapmap]
rs7625177	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7650079	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs9289501	0.82[ASN][1000 genomes]
rs940229	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9682712	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9846554	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9852009	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9852169	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9856799	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs9866235	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9868239	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135617000-135625600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:135617000-135626000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links