Variant report

Variant	rs10144017
Chromosome Location	chr14:80359465-80359466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11621196	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12879016	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2205226	0.97[ASN][1000 genomes]
rs4306430	0.86[ASN][1000 genomes]
rs6574531	0.86[ASN][1000 genomes]
rs72683310	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72683311	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72683312	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72683328	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8022988	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links