Variant report

Variant	rs10144567
Chromosome Location	chr14:64219601-64219602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10083359	0.82[ASN][1000 genomes]
rs10083535	0.82[ASN][1000 genomes]
rs10137805	0.82[ASN][1000 genomes]
rs10137933	0.82[ASN][1000 genomes]
rs10148637	0.82[ASN][1000 genomes]
rs10149710	0.82[ASN][1000 genomes]
rs10149737	0.82[ASN][1000 genomes]
rs10149828	0.82[ASN][1000 genomes]
rs10150009	0.82[ASN][1000 genomes]
rs10162453	0.82[ASN][1000 genomes]
rs11158505	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28575623	0.82[ASN][1000 genomes]
rs28821865	0.82[ASN][1000 genomes]
rs58485817	0.82[ASN][1000 genomes]
rs61984047	0.82[ASN][1000 genomes]
rs61985684	0.86[ASN][1000 genomes]
rs73263627	0.82[ASN][1000 genomes]
rs8009516	0.82[ASN][1000 genomes]
rs8020821	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1037824	chr14:64119493-64254025	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64213000-64220800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:64213400-64219800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:64216400-64230200	Weak transcription	HepG2	liver
4	chr14:64219200-64220000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:64219200-64220000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:64219200-64220000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:64219200-64220000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr14:64219200-64220200	Enhancers	HSMM	muscle
9	chr14:64219400-64219800	Enhancers	Stomach Mucosa	stomach
10	chr14:64219400-64219800	Flanking Active TSS	Hela-S3	cervix
11	chr14:64219400-64219800	Enhancers	Osteobl	bone
12	chr14:64219400-64220000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:64219400-64220000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr14:64219400-64220000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:64219400-64220000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr14:64219400-64220000	Flanking Active TSS	A549	lung
17	chr14:64219400-64220000	Enhancers	NH-A	brain
18	chr14:64219400-64220200	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr14:64219400-64221200	Enhancers	Placenta	Placenta
20	chr14:64219600-64220000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr14:64219600-64220000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:64219600-64220000	Enhancers	HSMMtube	muscle
23	chr14:64219600-64220000	Enhancers	Monocytes-CD14+_RO01746	blood

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