Variant report

Variant	rs10145097
Chromosome Location	chr14:55337653-55337654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55336799..55338659-chr14:55514913..55516718,2	MCF-7	breast:
2	chr14:55329931..55332245-chr14:55336217..55337731,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10133449	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10134163	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10146658	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12147422	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17128050	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28477407	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28542181	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28757745	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34429973	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4363780	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4402455	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57575708	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61702394	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7141319	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7141433	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73280512	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7492600	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8010689	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10145097	GCH1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55327000-55338200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr14:55329400-55347800	Weak transcription	Primary B cells from cord blood	blood
3	chr14:55330800-55347800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:55331800-55344800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr14:55331800-55347600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr14:55332800-55338000	Weak transcription	Small Intestine	intestine
7	chr14:55333200-55343800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr14:55334000-55346200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:55336400-55338400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr14:55336600-55338000	Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr14:55336800-55337800	Weak transcription	Liver	Liver
12	chr14:55336800-55338000	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr14:55336800-55338000	Active TSS	Duodenum Mucosa	Duodenum
14	chr14:55337000-55337800	Active TSS	H1 Cell Line	embryonic stem cell
15	chr14:55337000-55337800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:55337000-55337800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:55337000-55337800	Active TSS	H9 Cell Line	embryonic stem cell
18	chr14:55337000-55337800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:55337000-55337800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:55337000-55337800	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr14:55337000-55337800	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr14:55337000-55337800	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr14:55337000-55337800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:55337000-55337800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:55337000-55337800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr14:55337000-55337800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr14:55337000-55337800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:55337000-55337800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:55337000-55337800	Active TSS	Brain Angular Gyrus	brain
30	chr14:55337000-55337800	Active TSS	Brain Cingulate Gyrus	brain
31	chr14:55337000-55337800	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr14:55337000-55337800	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr14:55337000-55337800	Active TSS	Esophagus	oesophagus
34	chr14:55337000-55337800	Active TSS	Fetal Intestine Large	intestine
35	chr14:55337000-55337800	Active TSS	Fetal Kidney	kidney
36	chr14:55337000-55337800	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr14:55337000-55337800	Active TSS	Left Ventricle	heart
38	chr14:55337000-55337800	Active TSS	Ovary	ovary
39	chr14:55337000-55337800	Active TSS	Pancreas	Pancrea
40	chr14:55337000-55337800	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr14:55337000-55337800	Active TSS	Rectal Mucosa Donor 31	rectum
42	chr14:55337000-55337800	Active TSS	Rectal Smooth Muscle	rectum
43	chr14:55337000-55337800	Active TSS	Right Atrium	heart
44	chr14:55337000-55338000	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr14:55337000-55338000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:55337000-55338000	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr14:55337000-55338000	Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr14:55337000-55338000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:55337000-55338000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr14:55337000-55338000	Active TSS	Brain Anterior Caudate	brain

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