Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:72314229..72318890-chr14:72319811..72323615,5	MCF-7	breast:
2	chr14:72218474..72220315-chr14:72319928..72323369,3	MCF-7	breast:
3	chr14:71605408..71606120-chr14:72322432..72323318,2	K562	blood:

Variant related genes	Relation type
ENSG00000266869	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10132551	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10134940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138587	0.80[ASN][1000 genomes]
rs10139169	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10148887	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2533041	0.83[EUR][1000 genomes]
rs2533043	1.00[EUR][1000 genomes]
rs2533045	1.00[EUR][1000 genomes]
rs2533046	1.00[EUR][1000 genomes]
rs2533048	1.00[EUR][1000 genomes]
rs2533054	0.83[EUR][1000 genomes]
rs2533060	0.90[EUR][1000 genomes]
rs28588815	0.83[ASN][1000 genomes]
rs28706853	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574022	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141201	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7151501	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8022087	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs887404	0.92[CHB][hapmap]
rs887405	1.00[EUR][1000 genomes]
rs9323563	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv565044	chr14:72317961-72336142	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72319600-72323000	Weak transcription	Fetal Heart	heart
2	chr14:72321000-72323000	Weak transcription	Spleen	Spleen
3	chr14:72322400-72323000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:72322400-72323600	Enhancers	Primary B cells from peripheral blood	blood
5	chr14:72322400-72323600	Enhancers	Primary hematopoietic stem cells	blood
6	chr14:72322400-72323600	Enhancers	GM12878-XiMat	blood
7	chr14:72322400-72324000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:72322600-72323000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
9	chr14:72322600-72323600	Enhancers	Dnd41	blood
10	chr14:72322600-72324000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr14:72322800-72323200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:72322800-72323200	Enhancers	Hela-S3	cervix
13	chr14:72322800-72323200	Enhancers	K562	blood
14	chr14:72322800-72323400	Enhancers	HMEC	breast
15	chr14:72322800-72323600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:72322800-72323600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:72322800-72324000	Enhancers	Primary B cells from cord blood	blood

Quick Search: