Variant report

Variant	rs10147163
Chromosome Location	chr14:20829438-20829439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:20809956..20813449-chr14:20829422..20833018,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129484	Chromatin interaction
ENSG00000259001	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10129957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130660	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323412	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12323610	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12891805	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2297616	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2700	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3093882	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3093890	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3093897	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3093902	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3093904	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3093907	0.82[CEU][hapmap]
rs3093933	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3093939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3093942	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34848586	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4415933	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4981150	0.82[CEU][hapmap]
rs4981158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981983	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4981998	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57101853	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58530849	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59821173	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6575124	0.81[CEU][hapmap]
rs6575135	0.81[CEU][hapmap]
rs7161611	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8014147	0.85[EUR][1000 genomes]
rs8022565	0.81[CEU][hapmap]
rs878157	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs884368	0.82[CEU][hapmap]
rs9323870	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	nsv1037160	chr14:20517485-20901811	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
4	nsv541974	chr14:20517485-20901811	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
5	esv1806993	chr14:20743269-20841162	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv534131	chr14:20757405-20886235	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
7	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:20812400-20880200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:20812600-20831800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:20812600-20834600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:20812600-20841000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:20812600-20845600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:20813000-20830800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:20813200-20831600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:20813200-20869200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:20823200-20834600	Weak transcription	Small Intestine	intestine
10	chr14:20824600-20840800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:20824800-20836000	Weak transcription	Psoas Muscle	Psoas
12	chr14:20824800-20836200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr14:20824800-20839200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:20825000-20831400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:20825000-20836600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr14:20825000-20836800	Weak transcription	Stomach Mucosa	stomach
17	chr14:20825200-20834600	Weak transcription	Aorta	Aorta
18	chr14:20825200-20863200	Weak transcription	Fetal Heart	heart
19	chr14:20825400-20834200	Weak transcription	Colonic Mucosa	Colon
20	chr14:20825400-20834800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr14:20825800-20832400	Weak transcription	Lung	lung
22	chr14:20825800-20834600	Weak transcription	Right Ventricle	heart
23	chr14:20825800-20837400	Weak transcription	Fetal Kidney	kidney
24	chr14:20825800-20846600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:20826000-20831200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr14:20826000-20834000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr14:20826000-20834000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr14:20826000-20834200	Weak transcription	Thymus	Thymus
29	chr14:20826000-20834400	Weak transcription	Spleen	Spleen
30	chr14:20826000-20834600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:20826000-20836000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:20826200-20832400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr14:20826200-20834000	Weak transcription	Colon Smooth Muscle	Colon
34	chr14:20826200-20839000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr14:20826200-20841400	Weak transcription	K562	blood
36	chr14:20826400-20831200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr14:20826400-20834000	Weak transcription	NHLF	lung
38	chr14:20826400-20834200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr14:20826400-20834200	Weak transcription	Fetal Lung	lung
40	chr14:20826400-20836600	Weak transcription	Brain Substantia Nigra	brain
41	chr14:20826400-20836800	Weak transcription	Brain Angular Gyrus	brain
42	chr14:20826400-20847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:20826600-20830400	Weak transcription	Fetal Muscle Leg	muscle
44	chr14:20826600-20833000	Weak transcription	Left Ventricle	heart
45	chr14:20826600-20833800	Weak transcription	NHEK	skin
46	chr14:20826600-20834200	Weak transcription	Fetal Thymus	thymus
47	chr14:20826600-20834200	Weak transcription	GM12878-XiMat	blood
48	chr14:20826600-20834400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr14:20826600-20834400	Weak transcription	HMEC	breast
50	chr14:20826600-20836000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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