Variant report

Variant	rs10147671
Chromosome Location	chr14:80063672-80063673
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10133983	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10136332	1.00[AMR][1000 genomes]
rs17109661	1.00[AMR][1000 genomes]
rs221472	1.00[AMR][1000 genomes]
rs28521419	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80011800-80069200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80047600-80068800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:80061400-80064400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:80061600-80064600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:80062200-80064400	Enhancers	Hela-S3	cervix
6	chr14:80062200-80064600	Enhancers	Osteobl	bone
7	chr14:80062200-80065800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:80062400-80065200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:80062400-80065400	Enhancers	NHDF-Ad	bronchial
10	chr14:80062400-80066000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:80062600-80065400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:80062800-80064200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:80063000-80065200	Enhancers	NHLF	lung
14	chr14:80063200-80065600	Enhancers	NH-A	brain
15	chr14:80063400-80063800	Enhancers	HSMMtube	muscle
16	chr14:80063400-80064600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:80063400-80069600	Weak transcription	Aorta	Aorta
18	chr14:80063600-80064600	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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