Variant report

Variant	rs10147810
Chromosome Location	chr14:77991106-77991107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77923664..77926301-chr14:77989143..77991466,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151445	Chromatin interaction
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10131773	0.96[ASN][1000 genomes]
rs10151712	0.80[CHB][hapmap]
rs12101129	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs12147112	0.85[CHB][hapmap]
rs12588462	0.84[CHB][hapmap]
rs12589478	0.88[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs17105949	0.82[CHB][hapmap]
rs1997561	0.85[CHB][hapmap]
rs1997562	0.84[CHB][hapmap]
rs2284230	0.84[JPT][hapmap]
rs2299911	0.82[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs2299912	0.85[JPT][hapmap]
rs2299913	0.85[JPT][hapmap]
rs2299915	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs28393685	0.98[ASN][1000 genomes]
rs28482839	0.80[ASN][1000 genomes]
rs28654332	0.81[ASN][1000 genomes]
rs28676801	0.94[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28716286	0.84[ASN][1000 genomes]
rs28771140	0.98[ASN][1000 genomes]
rs34359219	0.80[ASN][1000 genomes]
rs61992441	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1053810	chr14:77987871-78148320	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77970200-78047200	Weak transcription	Fetal Heart	heart
2	chr14:77970800-77992600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr14:77971000-77991400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:77971600-77991800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr14:77972000-78018000	Weak transcription	Hela-S3	cervix
6	chr14:77972200-77991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:77972200-77991600	Strong transcription	Primary B cells from cord blood	blood
8	chr14:77972600-77991400	Strong transcription	Primary B cells from peripheral blood	blood
9	chr14:77972600-77992000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:77978000-78013400	Weak transcription	NHDF-Ad	bronchial
11	chr14:77978400-77992000	Weak transcription	NHLF	lung
12	chr14:77978600-77992400	Weak transcription	Fetal Lung	lung
13	chr14:77978600-78014600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr14:77978800-77991400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:77978800-77992800	Weak transcription	Fetal Brain Female	brain
16	chr14:77978800-78042200	Weak transcription	Fetal Brain Male	brain
17	chr14:77979000-78003800	Weak transcription	K562	blood
18	chr14:77979000-78009400	Weak transcription	Stomach Mucosa	stomach
19	chr14:77979000-78013800	Weak transcription	Pancreas	Pancrea
20	chr14:77979400-77997200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:77982800-77999800	Weak transcription	A549	lung
22	chr14:77985200-77991800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr14:77985200-78008800	Weak transcription	Gastric	stomach
24	chr14:77985200-78014800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr14:77985400-77991400	Strong transcription	Primary hematopoietic stem cells	blood
26	chr14:77985400-78007800	Weak transcription	Colon Smooth Muscle	Colon
27	chr14:77985400-78015000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:77985600-78007400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:77986000-77991200	Strong transcription	HSMM	muscle
30	chr14:77986200-78013800	Weak transcription	Esophagus	oesophagus
31	chr14:77986800-78008600	Weak transcription	Brain Germinal Matrix	brain
32	chr14:77987000-77991200	Strong transcription	NHEK	skin
33	chr14:77987400-77991600	Weak transcription	Fetal Stomach	stomach
34	chr14:77987400-77999400	Weak transcription	Fetal Intestine Small	intestine
35	chr14:77987400-78009200	Weak transcription	Aorta	Aorta
36	chr14:77987400-78021000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr14:77987600-78010200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:77987600-78010600	Weak transcription	Left Ventricle	heart
39	chr14:77987800-77992400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:77987800-77992800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr14:77987800-77997000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr14:77987800-77997200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr14:77987800-77997400	Weak transcription	Brain Angular Gyrus	brain
44	chr14:77987800-77999400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:77987800-78007200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr14:77987800-78008800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:77987800-78008800	Weak transcription	Fetal Thymus	thymus
48	chr14:77987800-78013400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr14:77987800-78013600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr14:77987800-78013800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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