Variant report

Variant	rs10148414
Chromosome Location	chr14:69042267-69042268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69037050..69041400-chr14:69041759..69045325,4	MCF-7	breast:
2	chr14:69042225..69044616-chr14:69056393..69058325,2	MCF-7	breast:
3	chr14:68408832..68411171-chr14:69041848..69043615,2	MCF-7	breast:
4	chr14:69040226..69045730-chr14:69257652..69262741,8	MCF-7	breast:
5	chr14:69041655..69043328-chr14:69251823..69254372,2	MCF-7	breast:
6	chr14:68932415..68937640-chr14:69040451..69046051,7	MCF-7	breast:
7	chr14:69033011..69036090-chr14:69041393..69045168,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10130694	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11621880	0.89[ASN][1000 genomes]
rs17105872	0.81[ASN][1000 genomes]
rs2285883	0.82[ASN][1000 genomes]
rs4902603	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55987972	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs8009944	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69036800-69052000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr14:69037000-69052600	Weak transcription	Colonic Mucosa	Colon
3	chr14:69037400-69042800	Weak transcription	Gastric	stomach
4	chr14:69037400-69042800	Weak transcription	Right Ventricle	heart
5	chr14:69037400-69042800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr14:69037400-69054000	Weak transcription	Fetal Kidney	kidney
7	chr14:69037800-69042800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:69038000-69042600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:69039200-69044400	Weak transcription	Liver	Liver
10	chr14:69039400-69042800	Weak transcription	Pancreas	Pancrea
11	chr14:69040400-69043800	Enhancers	Lung	lung
12	chr14:69040600-69045600	Enhancers	Adipose Nuclei	Adipose
13	chr14:69040800-69042800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:69041000-69047800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr14:69041000-69048200	Enhancers	Placenta	Placenta
16	chr14:69041200-69042800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:69041200-69043200	Enhancers	Fetal Muscle Leg	muscle
18	chr14:69041200-69045200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:69041200-69048200	Enhancers	HSMMtube	muscle
20	chr14:69041400-69042400	Enhancers	Fetal Stomach	stomach
21	chr14:69041400-69043400	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr14:69041400-69043800	Enhancers	Spleen	Spleen
23	chr14:69041400-69045400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:69041400-69045600	Enhancers	Osteobl	bone
25	chr14:69041400-69045800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr14:69041400-69046400	Enhancers	NHDF-Ad	bronchial
27	chr14:69041400-69047200	Enhancers	HSMM	muscle
28	chr14:69041400-69047600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:69041400-69048000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:69041600-69042800	Enhancers	A549	lung
31	chr14:69041600-69043600	Enhancers	Psoas Muscle	Psoas
32	chr14:69041600-69043800	Enhancers	Hela-S3	cervix
33	chr14:69041600-69044000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr14:69041600-69044600	Enhancers	NH-A	brain
35	chr14:69041600-69044800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:69041600-69045800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:69041600-69045800	Enhancers	HMEC	breast
38	chr14:69041600-69046000	Enhancers	HUVEC	blood vessel
39	chr14:69041600-69046400	Enhancers	NHLF	lung
40	chr14:69041800-69042400	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr14:69041800-69042600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr14:69041800-69043000	Weak transcription	Colon Smooth Muscle	Colon
43	chr14:69041800-69043000	Enhancers	Fetal Muscle Trunk	muscle
44	chr14:69041800-69043400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr14:69041800-69044400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr14:69041800-69044400	Weak transcription	Brain Hippocampus Middle	brain
47	chr14:69041800-69044800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr14:69041800-69046000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr14:69041800-69046000	Enhancers	HepG2	liver
50	chr14:69042000-69042400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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