Variant report

Variant	rs10148873
Chromosome Location	chr14:79748927-79748928
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10143375	1.00[AMR][1000 genomes]
rs10150816	1.00[AMR][1000 genomes]
rs2370938	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79745000-79749400	Active TSS	Osteobl	bone
2	chr14:79745200-79749400	Active TSS	Colon Smooth Muscle	Colon
3	chr14:79745400-79753600	Active TSS	Stomach Smooth Muscle	stomach
4	chr14:79745600-79752000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr14:79746600-79749200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:79746800-79749400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
7	chr14:79746800-79750200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
8	chr14:79747000-79750000	Active TSS	Fetal Stomach	stomach
9	chr14:79747000-79750200	Active TSS	Rectal Smooth Muscle	rectum
10	chr14:79747800-79749000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr14:79747800-79749400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:79747800-79749800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr14:79747800-79750000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:79747800-79751000	Weak transcription	Brain Germinal Matrix	brain
15	chr14:79747800-79759800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:79748400-79749200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:79748400-79749200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:79748400-79749400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:79748600-79749000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
20	chr14:79748600-79749000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
21	chr14:79748600-79749200	Flanking Active TSS	Placenta Amnion	Placenta Amnion
22	chr14:79748600-79749200	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr14:79748600-79749600	Active TSS	Aorta	Aorta
24	chr14:79748600-79750000	Weak transcription	Pancreas	Pancrea
25	chr14:79748800-79749000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr14:79748800-79749000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
27	chr14:79748800-79749000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
28	chr14:79748800-79749200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
29	chr14:79748800-79749400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:79748800-79749800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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