Variant report

Variant	rs10148890
Chromosome Location	chr14:105805055-105805056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105804694..105808440-chr14:105810912..105814400,3	K562	blood:
2	chr14:105766001..105767925-chr14:105803941..105806614,3	MCF-7	breast:
3	chr14:105801861..105804908-chr14:105805042..105809928,4	K562	blood:
4	chr14:105794770..105795327-chr14:105804546..105805386,2	MCF-7	breast:
5	chr14:105803943..105806633-chr14:105810962..105813485,2	MCF-7	breast:
6	chr14:105803948..105806070-chr14:105806076..105808263,2	MCF-7	breast:
7	chr14:105795771..105798760-chr14:105803162..105807544,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185024	Chromatin interaction
ENSG00000179364	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10133343	0.85[YRI][hapmap]
rs10134069	0.81[ASW][hapmap];0.95[YRI][hapmap]
rs10147832	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847153	0.80[YRI][hapmap]
rs11847295	0.87[YRI][hapmap]
rs11847920	0.91[YRI][hapmap]
rs57229884	0.83[AMR][1000 genomes]
rs7146660	0.80[YRI][hapmap]
rs7158718	0.87[YRI][hapmap]
rs9671246	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105782600-105807400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:105784000-105821800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:105789200-105805600	Enhancers	Brain Anterior Caudate	brain
4	chr14:105790200-105805400	Enhancers	Brain Substantia Nigra	brain
5	chr14:105793800-105821000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:105797000-105806800	Weak transcription	Aorta	Aorta
7	chr14:105797000-105849200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:105797200-105806600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:105797200-105810600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:105797200-105820800	Weak transcription	NHLF	lung
11	chr14:105797400-105807000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:105797400-105807000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:105797400-105812000	Weak transcription	K562	blood
14	chr14:105797400-105821200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr14:105798200-105818400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr14:105798400-105805400	Enhancers	Left Ventricle	heart
17	chr14:105798400-105805600	Enhancers	Right Ventricle	heart
18	chr14:105798400-105809400	Weak transcription	HepG2	liver
19	chr14:105798600-105805200	Enhancers	Pancreas	Pancrea
20	chr14:105798800-105807000	Weak transcription	Primary T cells from cord blood	blood
21	chr14:105799000-105806800	Weak transcription	Fetal Thymus	thymus
22	chr14:105799000-105807200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:105799000-105809400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:105799000-105822200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr14:105799600-105805600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:105799600-105814800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr14:105799600-105816000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr14:105799800-105830800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:105800200-105818200	Weak transcription	Stomach Mucosa	stomach
30	chr14:105800800-105818000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr14:105801400-105805400	Enhancers	Ovary	ovary
32	chr14:105801800-105805400	Enhancers	Liver	Liver
33	chr14:105802000-105805600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr14:105802400-105805600	Enhancers	Lung	lung
35	chr14:105802800-105805200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:105803000-105805400	Enhancers	Brain Cingulate Gyrus	brain
37	chr14:105803000-105805600	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr14:105803000-105807200	Weak transcription	HSMM	muscle
39	chr14:105803000-105807400	Weak transcription	Fetal Brain Male	brain
40	chr14:105803000-105808800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:105803400-105805200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr14:105803400-105805400	Enhancers	Fetal Heart	heart
43	chr14:105803400-105805600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:105803400-105805600	Enhancers	Spleen	Spleen
45	chr14:105803400-105806600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr14:105803400-105807400	Weak transcription	Fetal Brain Female	brain
47	chr14:105803400-105814800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:105803600-105805200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr14:105803600-105805200	Enhancers	Adipose Nuclei	Adipose
50	chr14:105803600-105805400	Enhancers	Colon Smooth Muscle	Colon

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