Variant report

Variant	rs1015130
Chromosome Location	chr6:117827493-117827494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:117826638..117828169-chr6:117832301..117834365,2	K562	blood:
2	chr6:117803267..117806417-chr6:117823935..117828011,5	MCF-7	breast:
3	chr6:117802549..117804711-chr6:117824121..117828201,5	K562	blood:
4	chr6:117826330..117829186-chr6:117866994..117868994,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164465	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1321813	0.85[CEU][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs210608	0.85[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs210612	0.86[ASN][1000 genomes]
rs210614	0.88[ASN][1000 genomes]
rs210615	0.88[ASN][1000 genomes]
rs210646	0.85[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs210647	0.86[ASN][1000 genomes]
rs210649	0.87[CEU][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs210651	0.84[CEU][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9766914	0.81[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117805200-117851200	Weak transcription	Right Ventricle	heart
2	chr6:117816400-117827800	Weak transcription	Right Atrium	heart
3	chr6:117816400-117828000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:117816400-117828600	Weak transcription	K562	blood
5	chr6:117816400-117841400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:117816800-117827800	Weak transcription	Gastric	stomach
7	chr6:117817800-117827600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:117818400-117833600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:117819600-117827600	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:117819800-117827800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:117819800-117831600	Weak transcription	Hela-S3	cervix
12	chr6:117819800-117834200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:117819800-117868800	Weak transcription	Spleen	Spleen
14	chr6:117820200-117827800	Weak transcription	NHDF-Ad	bronchial
15	chr6:117821200-117827600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:117821600-117868800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:117821800-117843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:117823200-117868800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:117823200-117869600	Weak transcription	Small Intestine	intestine
20	chr6:117823400-117827600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:117823600-117830800	Weak transcription	Brain Angular Gyrus	brain
22	chr6:117824400-117827600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:117824800-117827800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:117825200-117828400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:117825400-117827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:117825400-117828000	Strong transcription	NHEK	skin
27	chr6:117825400-117829400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:117825400-117833400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr6:117825600-117827600	Strong transcription	Lung	lung
30	chr6:117825600-117827800	Strong transcription	Left Ventricle	heart
31	chr6:117825600-117828000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:117825800-117828400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:117826000-117827600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:117826000-117827600	Genic enhancers	Osteobl	bone
35	chr6:117826000-117827800	Strong transcription	GM12878-XiMat	blood
36	chr6:117826200-117828000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:117826200-117830000	Enhancers	A549	lung
38	chr6:117826200-117842600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr6:117826200-117844800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:117826400-117828000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:117826400-117828000	Strong transcription	Liver	Liver
42	chr6:117826400-117828400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:117826400-117828400	Enhancers	NHLF	lung
44	chr6:117826400-117859800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:117826600-117827800	Strong transcription	Esophagus	oesophagus
46	chr6:117826600-117828000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:117826600-117828200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr6:117826600-117833400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:117826800-117827800	Weak transcription	Aorta	Aorta
50	chr6:117826800-117828000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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