Variant report

Variant	rs10151503
Chromosome Location	chr14:65846824-65846825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65846264..65850153-chr14:65876897..65880691,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10083343	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10083344	0.80[AMR][1000 genomes]
rs10083346	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10083348	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10083421	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10083485	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10083488	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10083525	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10130760	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10136947	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10136953	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10138765	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10146374	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11844348	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11845794	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11850160	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11850163	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12433416	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12433423	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17826448	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17826466	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28502530	0.84[AMR][1000 genomes]
rs28581569	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28668545	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56756005	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs57298509	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs57640052	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs58155831	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs58602070	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60936033	0.81[AFR][1000 genomes]
rs7150362	0.82[AMR][1000 genomes]
rs73282213	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73282223	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73282230	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73282232	0.84[AMR][1000 genomes]
rs73282237	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73282242	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73282250	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73282256	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73282260	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8017202	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8022077	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8022350	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8023130	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65840400-65850800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65841400-65848600	Weak transcription	Brain Substantia Nigra	brain

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