Variant report

Variant	rs10151604
Chromosome Location	chr14:22142820-22142821
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10137047	0.82[ASN][1000 genomes]
rs10138379	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10138803	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs10141478	0.84[CEU][hapmap]
rs10143044	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10145663	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10146733	0.90[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap]
rs10147663	0.89[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11157092	0.89[JPT][hapmap]
rs11157094	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12435524	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap]
rs12436422	0.95[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap]
rs12717305	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2204931	1.00[ASN][1000 genomes]
rs28698926	0.88[ASN][1000 genomes]
rs3748364	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs4982473	0.82[MEX][hapmap];0.81[TSI][hapmap]
rs4982482	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4982483	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6571976	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs6571990	0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7144733	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs8008166	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs8013567	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9323020	0.84[CEU][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422459	chr14:21931624-22169502	Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
3	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv901479	chr14:22102800-22146832	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv510629	chr14:22134425-22215842	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10151604	NYNRIN	cis	cerebellum	SCAN
rs10151604	SLC22A17	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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