Variant report

Variant	rs10151942
Chromosome Location	chr14:79983242-79983243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10083492	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10130369	0.83[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10138831	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10149385	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10150805	0.94[JPT][hapmap]
rs11848369	0.89[EUR][1000 genomes]
rs2019220	0.87[EUR][1000 genomes]
rs2043585	0.83[JPT][hapmap]
rs55809771	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57530235	0.89[EUR][1000 genomes]
rs59860458	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60209844	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61995206	0.87[EUR][1000 genomes]
rs7150181	0.83[JPT][hapmap]
rs74070260	0.89[EUR][1000 genomes]
rs8020593	0.94[JPT][hapmap]
rs9323673	0.94[JPT][hapmap]
rs9671249	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79979600-79983400	Enhancers	Brain Germinal Matrix	brain
2	chr14:79981200-79985200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:79981800-80009600	Weak transcription	Aorta	Aorta
4	chr14:79982800-79984000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:79982800-79985200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:79982800-79989200	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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