Variant report

Variant	rs10152742
Chromosome Location	chr15:33150111-33150112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33148879..33150784-chr15:33151258..33154124,2	K562	blood:

Variant related genes	Relation type
ENSG00000248905	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10519757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11071992	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11632403	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1869034	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3887107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8032931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv832962	chr15:33111517-33239736	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv903978	chr15:33144202-33308641	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv1041609	chr15:33148035-33355999	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv542339	chr15:33148035-33355999	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv903980	chr15:33149087-33264201	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33096200-33154000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:33096400-33159000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:33118600-33159000	Weak transcription	Gastric	stomach
4	chr15:33131200-33153800	Weak transcription	Fetal Kidney	kidney
5	chr15:33131800-33164800	Weak transcription	Pancreas	Pancrea
6	chr15:33132400-33154000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:33132800-33154000	Weak transcription	Brain Angular Gyrus	brain
8	chr15:33133000-33150400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:33137800-33153600	Weak transcription	Fetal Thymus	thymus
10	chr15:33138800-33190600	Weak transcription	Thymus	Thymus
11	chr15:33139600-33190600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:33142600-33168200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:33144000-33153600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr15:33147000-33191400	Weak transcription	Lung	lung
15	chr15:33147200-33150200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:33147400-33150200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:33147400-33150400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:33147400-33150400	Enhancers	Osteobl	bone
19	chr15:33147400-33150600	Enhancers	HMEC	breast
20	chr15:33147400-33150800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:33147400-33150800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr15:33147400-33150800	Enhancers	NHEK	skin
23	chr15:33147400-33151200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:33147400-33152200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:33147600-33150400	Genic enhancers	HSMM	muscle
26	chr15:33147600-33150400	Enhancers	NHLF	lung
27	chr15:33148000-33150200	Enhancers	Stomach Smooth Muscle	stomach
28	chr15:33148000-33158600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr15:33148400-33153800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr15:33148600-33153800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:33148600-33153800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:33148800-33150600	Enhancers	A549	lung
33	chr15:33148800-33153400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:33148800-33153800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:33148800-33153800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:33149000-33150200	Weak transcription	Colon Smooth Muscle	Colon
37	chr15:33149000-33150400	Enhancers	NHDF-Ad	bronchial
38	chr15:33149000-33153400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr15:33149000-33153600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:33149000-33153600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr15:33149000-33153600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:33149000-33153800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr15:33149000-33153800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr15:33149000-33158800	Weak transcription	Hela-S3	cervix
45	chr15:33149000-33202000	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:33149200-33153600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:33149200-33153600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:33149200-33153800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr15:33149200-33158800	Weak transcription	Stomach Mucosa	stomach
50	chr15:33149400-33152600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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