Variant report

Variant	rs10152814
Chromosome Location	chr15:34475400-34475401
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34474173..34475997-chr15:34500138..34502124,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10152545	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3507159	chr15:34456709-34485891	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3507160	chr15:34456709-34485891	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	esv3326811	chr15:34472885-34475433	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34454000-34477400	Weak transcription	HSMM	muscle
2	chr15:34454200-34497800	Weak transcription	Osteobl	bone
3	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
4	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:34459000-34478400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:34464600-34500400	Weak transcription	Hela-S3	cervix
7	chr15:34464800-34477000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:34465000-34477800	Weak transcription	Thymus	Thymus
9	chr15:34466400-34500400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:34466600-34482800	Weak transcription	NHDF-Ad	bronchial
11	chr15:34466800-34477400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:34466800-34477600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:34466800-34477600	Weak transcription	Primary B cells from cord blood	blood
14	chr15:34467000-34477200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:34467000-34500800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr15:34467200-34478400	Weak transcription	Lung	lung
17	chr15:34467200-34491400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:34467200-34500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:34467400-34486200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:34468000-34478400	Weak transcription	Dnd41	blood
21	chr15:34468000-34496400	Weak transcription	Fetal Lung	lung
22	chr15:34468000-34497800	Weak transcription	NHEK	skin
23	chr15:34468200-34478200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:34468200-34485800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:34468200-34498000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:34468400-34477000	Weak transcription	Primary T cells from cord blood	blood
27	chr15:34468600-34475400	Weak transcription	Placenta	Placenta
28	chr15:34468600-34480600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:34468800-34477400	Weak transcription	Fetal Stomach	stomach
30	chr15:34469200-34477200	Weak transcription	Fetal Muscle Leg	muscle
31	chr15:34470200-34477400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:34470400-34477800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr15:34471000-34501000	Weak transcription	Aorta	Aorta
34	chr15:34471400-34481000	Weak transcription	Brain Angular Gyrus	brain
35	chr15:34471600-34500400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:34471800-34477400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr15:34472200-34477200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:34472400-34475600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:34473000-34480600	Weak transcription	Brain Anterior Caudate	brain
40	chr15:34473200-34477000	Weak transcription	Fetal Intestine Small	intestine
41	chr15:34473200-34477800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:34473200-34477800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:34473400-34477000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:34473400-34500400	Weak transcription	HSMMtube	muscle
45	chr15:34473800-34477400	Weak transcription	Brain Germinal Matrix	brain
46	chr15:34474000-34478000	Weak transcription	GM12878-XiMat	blood
47	chr15:34474600-34475600	Enhancers	Colon Smooth Muscle	Colon
48	chr15:34474600-34475600	Enhancers	HUVEC	blood vessel
49	chr15:34474800-34476200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr15:34475000-34475400	Enhancers	H1 Cell Line	embryonic stem cell

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