Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10163153	1.00[CEU][hapmap];0.80[MEX][hapmap]
rs11856554	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11856580	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12440292	0.88[CEU][hapmap];0.93[MEX][hapmap]
rs12902622	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12908589	0.82[EUR][1000 genomes]
rs12914046	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1552033	0.88[CEU][hapmap]
rs1552034	0.87[CEU][hapmap]
rs17236671	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17269684	1.00[CEU][hapmap];0.92[MEX][hapmap]
rs28514722	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35384735	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35743616	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36034625	0.84[EUR][1000 genomes]
rs4419005	0.83[CHB][hapmap];0.81[CHD][hapmap];0.82[EUR][1000 genomes]
rs7179805	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8035572	0.83[LWK][hapmap]
rs8036403	0.88[CEU][hapmap]
rs8037054	0.88[CEU][hapmap]
rs8041216	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv976941	chr15:59843990-59846178	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59836400-59845400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:59839000-59847600	Weak transcription	Small Intestine	intestine
3	chr15:59841400-59848200	Enhancers	HepG2	liver
4	chr15:59841600-59861600	Weak transcription	Gastric	stomach
5	chr15:59843600-59846000	Weak transcription	Stomach Mucosa	stomach
6	chr15:59843600-59851200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:59843800-59846000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr15:59843800-59846000	Weak transcription	Fetal Intestine Large	intestine
9	chr15:59843800-59846000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:59843800-59846200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:59844200-59846000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:59844200-59847200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:59844400-59845400	Weak transcription	A549	lung
14	chr15:59844400-59846000	Weak transcription	Fetal Intestine Small	intestine
15	chr15:59844600-59845600	Weak transcription	Hela-S3	cervix

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